Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00284 ATGGGCTTTGATATCTCTAACCCAGGGCTTCGACTTGGACTTGGTCTTGGTCTTGGCCTCGGCCTCCATGATGTTCAGTCATCAGAAAATTGCATGAAGAGCGATGAACAAAGGCAAAGGCAAAGACAAAGCCAGAAGAAAAAGGAAGCGGATCCATTTAACAACAAGGCTTACCCATCACTTACGTTAAGACCACCCGATGATGAGGCAAATAATAATAAGATTGAATCCGATGAATATAATTATTATTTCCATCGACATGCCTCTTCTCCAAGTGCAGTGTCTTCGTTTTCCAACTCATCTAGCATCATCAAGAGAGAGAGAGATCAGTTCGCGGGCGAAGAACTTGAGTTAGAGGTAGAGAATATACCGTCAAGGGTTGTCGATGTTGATGAAAATGGTTACCCCAAGAAGAAACTTAGGCTCACCAAACAACAATCTGCAGTCTTAGAAGATAGCTTCAAAGAGCACTCTACTCTCACTCCGAAACAGAAGCAAGAATTGGCAAAGAAACTGAATCTGCGGGCGAGACAAGTGGAGGTGTGGTTTCAGAACAGAAGAGCAAGGACAAAACTGAAACAAACCGAAGTGGACTGTGAGTTCCTGAAAAAGTGCTGTGAAACTCTAACCGAGGAGAAGAAGATGCTGGAAAAAGAGTTGCAAGAGCTTAAATCGATGAAAACAACAGTGGGACCCTTTTATATGCAGCTTCCAGTGGCAAGCCTTACAATATGCCCTTCTTGTGAGAGAATTTGCGGTGGCAGTGGCGGCCCGAGCAACAATGGCTCCTCTCCCACGACGGCTTTGCTTGTAGGCCCAAAGGCCCATCATGATCAGCACTTCTATAAAAATAACTATACATTCACCCAATCTTCCGCAGCTTGCTAG 888 0.4471 MGFDISNPGLRLGLGLGLGLGLHDVQSSENCMKSDEQRQRQRQSQKKKEADPFNNKAYPSLTLRPPDDEANNNKIESDEYNYYFHRHASSPSAVSSFSNSSSIIKRERDQFAGEELELEVENIPSRVVDVDENGYPKKKLRLTKQQSAVLEDSFKEHSTLTPKQKQELAKKLNLRARQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTEEKKMLEKELQELKSMKTTVGPFYMQLPVASLTICPSCERICGGSGGPSNNGSSPTTALLVGPKAHHDQHFYKNNYTFTQSSAAC 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00284 295 CDD homeodomain 136 194 IPR001356 GO:0003677
Pumo10g00284 295 SMART halz 193 237 IPR003106 GO:0006355|GO:0043565
Pumo10g00284 295 SUPERFAMILY Homeodomain-like 136 201 IPR009057 -
Pumo10g00284 295 Gene3D - 131 198 - -
Pumo10g00284 295 MobiDBLite consensus disorder prediction 29 74 - -
Pumo10g00284 295 Coils Coil 199 229 - -
Pumo10g00284 295 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 15 261 - -
Pumo10g00284 295 SMART HOX_1 136 197 IPR001356 GO:0003677
Pumo10g00284 295 Pfam Homeodomain 137 191 IPR001356 GO:0003677
Pumo10g00284 295 ProSiteProfiles 'Homeobox' domain profile. 133 193 IPR001356 GO:0003677
Pumo10g00284 295 MobiDBLite consensus disorder prediction 29 53 - -
Pumo10g00284 295 ProSitePatterns 'Homeobox' domain signature. 168 191 IPR017970 GO:0000981|GO:0006355
Pumo10g00284 295 Pfam Homeobox associated leucine zipper 193 227 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00284 Pumo-Chr10 3829841 3831801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00284 104 295 Homeobox Transcription Factor Family AT4G37790 56.373 4.62e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo10g00284 Homeodomain 2.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00284 K09338 - gmx:100790927 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00284 10 3829841 3831801 Pumo10g00284 10 3829841 3831801 ECH