Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00283 ATGGAGGAATACATTAATAATCACCTAAGCGAAAACACAAGTCCAAGTCCAAGGGCAAATTTGTTATACTCCTTGGCCGGTGGTTCAAGCGTAGGAAACCGCCACCACCAACTTCAATTTAACACCTTTCATCTTCAATCGGGTGGATCGGATCACTGTTTTCAACCCGATCAAGTACCACACCCTAGTGTGAAAATCGAGTCCAACAATTCCCACCTTCACTCTCCTATCTTCCATTATCCTCTAATGAGACCAAATCTTCACCACACGCTGCATCCTCAGCAAGGAGGGAGCCAGAGCTCTAACGAACTCGAAGCCATAAAAGCCAAAATCATTGCCCATCCTCACTACTCCAATCTTTTAGAAGTTTACATGGATTGCCAAAAGGTAGGAGCTCCGCCAGAAGTGGTGGCGCGTTTGGCTGCGGTTCGGCAGGATTTTGAGGTACGGCAGCGATCTTTGGTTAGGTCTAGGGAAACCTGCAAGGATCCAGAACTTGATGAATTCATGGAAGCTTACTATGACATGCTTGTGAAGTATCGGGAGGAATTAACGAGGCCTATACAAGAGGCTACGGATTTCATGCGCAGGATAGAAACTCAGCTGAACACGCTTTGCAATGGAACCGTGCGGATCTTCTCTGATGATAAGTGGGAAAACATTGGTTCATCGGAAGAGGATGAAGACAACAGTGGTGGTGGAGAAACAGAGATTGATCCCCGGGCAGAAGACCGTGAACTCAAAAGCCACTTGCTGAAGAAGTACAGTGGTTGCTTAAGTAGCCTTAAGCAAGAACTTTCAAAGAAAAGGAAAAAAGGAAAACTGCCTAAAGATGCTAGGCAAAAGCTACTTAGCTGGTGGGAATTACATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTGGCCCTGGCTGAAGCAACTGGTTTGGATCAGAAGCAAATAAATAATTGGTTCATAAATCAAAGGAAGCGGCACTGGAAACCATCAGAAGACATGCAATTTATGGTCATGGATGGCCTGCATACGCAGAATGCAACTCTCTATATGGATGGCCACTACATGCCTGATGGCCATTACCGTTTAGGGCCATAA 1095 0.4557 MEEYINNHLSENTSPSPRANLLYSLAGGSSVGNRHHQLQFNTFHLQSGGSDHCFQPDQVPHPSVKIESNNSHLHSPIFHYPLMRPNLHHTLHPQQGGSQSSNELEAIKAKIIAHPHYSNLLEVYMDCQKVGAPPEVVARLAAVRQDFEVRQRSLVRSRETCKDPELDEFMEAYYDMLVKYREELTRPIQEATDFMRRIETQLNTLCNGTVRIFSDDKWENIGSSEEDEDNSGGGETEIDPRAEDRELKSHLLKKYSGCLSSLKQELSKKRKKGKLPKDARQKLLSWWELHYKWPYPSESEKVALAEATGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHTQNATLYMDGHYMPDGHYRLGP 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00283 364 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 89 336 - -
Pumo10g00283 364 SMART KNOX2_2 156 207 IPR005541 GO:0003677|GO:0005634
Pumo10g00283 364 FunFam Homeobox protein knotted-1-like 2 271 333 - -
Pumo10g00283 364 SMART HOX_1 268 333 IPR001356 GO:0003677
Pumo10g00283 364 Pfam KNOX1 domain 106 147 IPR005540 GO:0003677|GO:0005634
Pumo10g00283 364 MobiDBLite consensus disorder prediction 221 243 - -
Pumo10g00283 364 SMART KNOX1_2 105 149 IPR005540 GO:0003677|GO:0005634
Pumo10g00283 364 Pfam KNOX2 domain 160 206 IPR005541 GO:0003677|GO:0005634
Pumo10g00283 364 Pfam ELK domain 246 267 IPR005539 GO:0003677
Pumo10g00283 364 ProSitePatterns 'Homeobox' domain signature. 304 327 IPR017970 GO:0000981|GO:0006355
Pumo10g00283 364 SMART ELK_2 246 267 IPR005539 GO:0003677
Pumo10g00283 364 ProSiteProfiles ELK domain profile. 246 266 IPR005539 GO:0003677
Pumo10g00283 364 Pfam Homeobox KN domain 286 325 IPR008422 GO:0003677|GO:0006355
Pumo10g00283 364 ProSiteProfiles 'Homeobox' domain profile. 266 329 IPR001356 GO:0003677
Pumo10g00283 364 SUPERFAMILY Homeodomain-like 267 340 IPR009057 -
Pumo10g00283 364 CDD homeodomain 278 330 IPR001356 GO:0003677
Pumo10g00283 364 Gene3D - 271 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00283 Pumo-Chr10 3816056 3820667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00283 50 364 Homeobox Transcription Factor Family AT4G08150 66.055 1.96e-143 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pumo10g00283 KNOX2 6.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00283 - - gmx:100798133 619.387