Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00280 ATGATCCCAAACCTTCAAATCCCTCACTGGGACGCCGACGGAGGAGCACTCTCCCCGTTCTCTTCCAATGCTGACACGTGCTCATTCTCCTCGGACCACTTCCGAATGTTCCAGTTCAAGGTTCGGAACTGTCCACGTGGCAGGTCTCACGACTGGATGGAGTGTCCGTACGCCCACCCTGCCGAGAAGGCTCGCCGGCGTGACCCTCGCAAGTACCTCTACTCCGGCACGGCCTGCCCCGATTACCGGAAGGGGAACTGCAAGAGGGGTGACACGTGTCAGTTCGCGCATGGAGTCTTCGAATGCTGGCTCCACCCTTCTCGCTACCGGACCCAGCTCTGTAAAGACGGAACAAATTGCCGTCGCAGAGTGTGTTTCTTCGCTCACACCAACGACCAACTCCGCGTGGTGACGGAATCATCGTCGTCGTCCTTTGTTTCCTCTCCCACTTCGGTCCTTAACTCTTCGTTCTCATCCAACTCGCCACCCTCTTCGCCGTACGGCGTCGTACAGAGCGTGCGGGAGATAGTTAAGGCAATGCAGAACGTTCAGCTGGAGGAAACTCGTCGCAGCGTGTTCGGGTCGCCACGTGGCGGGTTTTGGAGTGTGAATGGGTGTGAGGAAGAGCCTGCTATGGAGAGGGTGGAATCGGGGAGAGACATTAGAGCGAGAATCTATGCCAAGCTGCTTAGCATGGAGAACTCGATTGCAGCCTCTGCTCCTGACATTGGATGGGTATCGGAACTCGTCAAATGA 756 0.5675 MIPNLQIPHWDADGGALSPFSSNADTCSFSSDHFRMFQFKVRNCPRGRSHDWMECPYAHPAEKARRRDPRKYLYSGTACPDYRKGNCKRGDTCQFAHGVFECWLHPSRYRTQLCKDGTNCRRRVCFFAHTNDQLRVVTESSSSSFVSSPTSVLNSSFSSNSPPSSPYGVVQSVREIVKAMQNVQLEETRRSVFGSPRGGFWSVNGCEEEPAMERVESGRDIRARIYAKLLSMENSIAASAPDIGWVSELVK 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00280 251 Gene3D - 72 137 - -
Pumo10g00280 251 FunFam Zinc finger CCCH domain-containing protein 66 31 99 - -
Pumo10g00280 251 SUPERFAMILY CCCH zinc finger 72 102 IPR036855 GO:0046872
Pumo10g00280 251 PANTHER UNKEMPT FAMILY MEMBER 28 251 IPR045234 -
Pumo10g00280 251 ProSiteProfiles Zinc finger C3H1-type profile. 73 100 IPR000571 GO:0046872
Pumo10g00280 251 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 78 98 IPR000571 GO:0046872
Pumo10g00280 251 SMART c3hfinal6 108 131 IPR000571 GO:0046872
Pumo10g00280 251 SMART c3hfinal6 73 99 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00280 Pumo-Chr10 3758244 3759444 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00280 29 192 C2H2 Transcription Factor Family AT5G12850 48.454 5.67e-55 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo10g00280 zf-CCCH 1.4e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00280 - K23048 gmx:100786368 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00280 10 3758244 3759444 Pumo10g00280 10 3758244 3759444 ECH