Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00266 ATGTTGATGGAGAGTGATATGTACACTGCTCCACTGGACATTTCTGGCCGAGGTGCTACAGTAATAGATGAAATTTCCCAACATTCCACCTCAAATCCTCTCATTCAGTGCTATTCATTTGACCTTAACAACCAATCCCACATCATAAATGGAATTTCAATGCTTTCTGGAGAGCAAGGTGAACCTATGAGTAATGTCCATGCTGATGCTTGTTTCATTAATCCTTCAATTATTGCTGACTCTAGTCAATTAGCTACATCACAAGGAAAGACTATTGTGGGAGATTCCTCAAATCCCATGGAGAACACTGAGCTTCAAGAGCATTTAGTTGGAGGAATGCCAATTACTCCCTCTTCCCTTGCTGCCATTCTTGCTGCTAGAATTGGTCTTGAAGAAAATTTGGAAAATTCATCAGTCTTGCCTCCCTCCCTCTGCTCAATGGGGGCATTGGGGGCATTCTTCAACAATTTGCAAGGTACTTCAAATTCAAACCCTTTGTCTGCAACTTTTGAGGACTGTGGTTACAATGAAGTTCCTAGTAAGTGGAATGCTAACAAGTTTTCTAAAGCTCCAGAGATTGATGGAACTGGGTGTCAGCCTTATTCTTCTATAGCAAATCTGGATCCAAATGAATGGGTATCATCAAATCTTGCAAACATGGCCAATCATGCTTACCATTCCTCTAGCTTTAGCAAGGAACTTTCCCTGAGTCTTGCAACATCTACAACAGCAGGACAATGCTCAGAGGTGAGTTGCTCTAATGTGACCCCATGCATGAATGGATCCATGTCAGCAGGGTTGGAGCAAGCCTCCTGCAGCAGCAGTAGGGAACTTTCTATGAATTTGGGTGGTAATAAATATGTACAGTTTTCACCGGAAGTACTGGAATCGAGATACCTTGTTGGGATTCAAGAGATACTTGCTCAAATTGCAAGATATTCATTTGAAAATCTAGAACAGTTAAATTATTCAGCTGCTGGAAATAGAGCAGGTGGAAACAAGTCGAGTTCAGCCTTCCCACCCAAGAGAAGGATACTGATAGATCACAATGCAAATTCTATGTATGAAGGTCATGCAGAGTCTCCAATGCAAAGGCTTGCTTCTGAATCAAAGAAAGCCGAACTCCTGACACTTCTACAACTGGTGGACAATCGATATAGCCAGTGTTTGGATGAGATACATACTGTTGTATCCGCATTCCACGCCGCTACAGAGCTGGACCCGCAAATTCATGCACATTTTGCCCTTCAAACCATCTCTATCCTTTACAAGGACTTGCGAGAGAGGATTAGCAATTACATTCTTGCCATGGGATCAAATTTCAACAACTCATGCTCAGAAGAGAATGAATGGTCTGTTGAAACTTCATTCCTTCAAAAGCAATGGGCTCTCCAGCAGTTGAAAAGAAAAGATCAGCTGTGGAGGCCCCAAAGAGGCTTGCCAGAAAGATCCGTCTCGGTTCTACGTGCTTGGATGTTTCAGAATTTCCTGCATCCGTATCCTAAAGATGCAGAGAAGCATTTACTTGCAGTAAAAAGTGGGTTGACGAGAAGCCAGGTATCCAATTGGTTTATAAATGCTCGTGTTCGGCTGTGGAAACCTATGATTGAAGAGATGTATGCTGAAATGAATAAAAGAAAGGTTTATCGAAATGAAGAAGCAATGCAGAGCAACCACGGAAACAGGATAAGCATGAGCAATCAAAGGTTTAATCAGTGTCAACTATAG 1728 0.4213 MLMESDMYTAPLDISGRGATVIDEISQHSTSNPLIQCYSFDLNNQSHIINGISMLSGEQGEPMSNVHADACFINPSIIADSSQLATSQGKTIVGDSSNPMENTELQEHLVGGMPITPSSLAAILAARIGLEENLENSSVLPPSLCSMGALGAFFNNLQGTSNSNPLSATFEDCGYNEVPSKWNANKFSKAPEIDGTGCQPYSSIANLDPNEWVSSNLANMANHAYHSSSFSKELSLSLATSTTAGQCSEVSCSNVTPCMNGSMSAGLEQASCSSSRELSMNLGGNKYVQFSPEVLESRYLVGIQEILAQIARYSFENLEQLNYSAAGNRAGGNKSSSAFPPKRRILIDHNANSMYEGHAESPMQRLASESKKAELLTLLQLVDNRYSQCLDEIHTVVSAFHAATELDPQIHAHFALQTISILYKDLRERISNYILAMGSNFNNSCSEENEWSVETSFLQKQWALQQLKRKDQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNKRKVYRNEEAMQSNHGNRISMSNQRFNQCQL 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00266 575 SUPERFAMILY Homeodomain-like 476 543 IPR009057 -
Pumo10g00266 575 ProSiteProfiles 'Homeobox' domain profile. 471 534 IPR001356 GO:0003677
Pumo10g00266 575 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 219 556 - -
Pumo10g00266 575 SMART HOX_1 474 538 IPR001356 GO:0003677
Pumo10g00266 575 Pfam Homeobox KN domain 491 530 IPR008422 GO:0003677|GO:0006355
Pumo10g00266 575 CDD homeodomain 474 535 IPR001356 GO:0003677
Pumo10g00266 575 Gene3D - 477 557 - -
Pumo10g00266 575 SMART prehox3 288 432 IPR006563 -
Pumo10g00266 575 Pfam Associated with HOX 294 431 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00266 Pumo-Chr10 3618243 3621754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00266 233 548 Homeobox Transcription Factor Family AT4G32980 56.250 1.68e-106 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pumo10g00266 POX 1.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00266 - - gmx:100820354 1033.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00266 10 3618243 3621754 Pumo10g00266 10 3618243 3621754 ECH
Pumo9g00415 9 6552904 6553200 Pumo10g00266 10 3618243 3621754 PCT