Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00261 ATGCCAGATCCAAGCAGCGCGTGTGGCCACCATAACTTTTCCTTGTACAAAATAGAGGACGAAGAGAACAAAAGAGGTTACGAGTATGAAAAATGGATGTCTTCAAAGGTGAGGTTGACGAGAAAAATGATGAGCCCACCTAGCAGCGATATAGCCACAAAGAAAGCATTGAATATTATTACTAGGGTTTGTGCGGATTGTAACACAACCAGTACCCCACTCTGGAGGAGTGGTCCTAATGGTCCTAAGTCACTTTGCAATGCCTGCGGCATTCGACAGAGGAAGGCAAGAAGGGCAATGGCAGAAGCTGCGAATGGTTTTGCCCCTTCCATGAATGCATCTTCTCCAAAGATCAGAGTGCATCACAAGGAAAAGAAGTCTCGTGCAAACCATTTTGCACGGTTCAAGAATAAGTGCAAGGCAACTACTAGTACTGCTGCTGCAGGAACATCTCAGCAGCAGAAAGAGAAAGTGAAGATTGATTTCAAGGATTTTGCTATAAGTTTGAGGGATAATTCGGCTTTGAAGCAAGTGTTTCCAATGGATGAAGTAGCTCAGGTGGCGCTGCTTCTCATGGATTTATCCTGTGGCTTTGTTTACTTTTAA 606 0.4422 MPDPSSACGHHNFSLYKIEDEENKRGYEYEKWMSSKVRLTRKMMSPPSSDIATKKALNIITRVCADCNTTSTPLWRSGPNGPKSLCNACGIRQRKARRAMAEAANGFAPSMNASSPKIRVHHKEKKSRANHFARFKNKCKATTSTAAAGTSQQQKEKVKIDFKDFAISLRDNSALKQVFPMDEVAQVALLLMDLSCGFVYF 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00261 201 ProSitePatterns GATA-type zinc finger domain. 64 89 IPR000679 GO:0006355|GO:0043565
Pumo10g00261 201 Pfam GATA zinc finger 64 97 IPR000679 GO:0006355|GO:0043565
Pumo10g00261 201 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 56 199 - -
Pumo10g00261 201 SMART GATA_3 58 109 IPR000679 GO:0006355|GO:0043565
Pumo10g00261 201 ProSiteProfiles GATA-type zinc finger domain profile. 62 94 IPR000679 GO:0006355|GO:0043565
Pumo10g00261 201 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 60 98 - -
Pumo10g00261 201 CDD ZnF_GATA 63 100 IPR000679 GO:0006355|GO:0043565
Pumo10g00261 201 Gene3D - 60 103 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00261 Pumo-Chr10 3537934 3538680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00261 26 200 C2C2-Gata Transcription Factor Family AT4G26150 38.571 5.64e-25 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pumo10g00261 GATA 2.9e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00261 - - gmx:102659929 307.375