Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00254 ATGAAGGGAGTTACAGTGAAAGTGGAAGAAACAATGGCATATGCTTCTTCATCTTCATCTTCATCCCCACAGCCAATGGAAGGGTTGCACGAGGTGGGACCCCCTCCGTTTCTCACCAAGACATTTGAAGTGGTGGAAGACCCATCCACAGACGACATCGTTTCATGGAGCAGGGCGCGCAACAGTTTCGTCGTTTGGGACTCTCACAAGTTCTCCACCACCATCTTGCCTCGCTACTTCAAGCACAACAATTTCTCCAGCTTCGTCCGACAACTCAACACCTATGGTTTTAGGAAAATTGATCCGGATAAATGGGAATTTGCGAACGAAGGGTTTTTGGCCGGGCAGAGGCATTTGTTGAAGACGATAAAGAGAAGGAGGCACGTGACGCAGACGCAGACACAGTCACATGAGGGAGGAGGTGGGGCTTGTGTTGAATTGGGGGAGTTTGGGTTGGAAGGTGAGATTGAGAGGTTGAGGAGAGACAGGACAGTGTTGATGGCTGAAATTGTGAGGTTGAGGCAGCAACAGCACAACTCAAGGGAGCAATTGTTGTCCATGGAGACTAGGTTGCAAACCACCGAGAAGAAACATCAACAGATGATGACTTTTCTTGCAAAAGCAGCTCAACAACCAGGCTTTTATGCAACAGTTACTTCAGAGGAATGCTCAGAACAAAGAATTGCAAGGTGTTAG 696 0.4813 MKGVTVKVEETMAYASSSSSSSPQPMEGLHEVGPPPFLTKTFEVVEDPSTDDIVSWSRARNSFVVWDSHKFSTTILPRYFKHNNFSSFVRQLNTYGFRKIDPDKWEFANEGFLAGQRHLLKTIKRRRHVTQTQTQSHEGGGGACVELGEFGLEGEIERLRRDRTVLMAEIVRLRQQQHNSREQLLSMETRLQTTEKKHQQMMTFLAKAAQQPGFYATVTSEECSEQRIARC 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00254 231 FunFam Heat shock transcription factor 1 30 127 - -
Pumo10g00254 231 PRINTS Heat shock factor (HSF) domain signature 88 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo10g00254 231 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo10g00254 231 PRINTS Heat shock factor (HSF) domain signature 37 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo10g00254 231 Gene3D - 30 127 IPR036388 -
Pumo10g00254 231 SMART hsfneu3 33 126 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo10g00254 231 Pfam HSF-type DNA-binding 37 126 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo10g00254 231 Coils Coil 156 176 - -
Pumo10g00254 231 ProSitePatterns HSF-type DNA-binding domain signature. 76 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo10g00254 231 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 23 220 IPR027725 -
Pumo10g00254 231 SUPERFAMILY "Winged helix" DNA-binding domain 33 126 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00254 Pumo-Chr10 3412503 3413288 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00254 23 224 HSF AT2G26150 68.293 1.49e-106 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pumo10g00254 HSF_DNA-bind 9e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00254 K09419 - gmx:100794605 376.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00254 10 3412503 3413288 Pumo10g00254 10 3412503 3413288 ECH