LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo10g00242	ATGTCTGTTCAACAGCCATGTGCCGCCTCACTGCAAAACATCACAATGGTGGCTGTTGACAAAGACAAAAACAGTGCCCATGCTTTCCGTTGGGCCGTTAATCATCTCGACAACCCCGTCATCATTGCCGTCCATGTCAAGCACAAAAACTTTTCTCATCATGTCACCAATGTGTTTCCACCAGACGAAGAGGATGTAGCCAATATTTTCAATAACTTGCGTGGAATGTGTAACCGCAAAGCTGTCACGATGAAAGAAGCCGTAGTCGATGATAGTGATGTTGTGAGAGGACTTTTAGAGTTTGCAAACAGGAATGCCATACATAGTATCGTGGTCGGTGCATCCGCCAAAAACCCTTTGACAAGTCTCAAAATGTTTAAAGCCTATCAGTATCAGGATATACCAACAGCCATGATCAAATCAGCCCCAGATTACTGCTCTGTGTACATAATTTCGAAATTGAAGATTGTGTCAGCTCGATCAGCAGTACGGTCAAAAAGTTTTGTGGCACCGAAACAACTTCCTGTGCAGGCATGTCCACATAGTGAACCAGAAGGTGGATCAGTAAGGGGACAACCACCTAGAAGTAGGGGCACTTACGAAGGAGCAGCAGAACAAATGAGAATACAGGCACGTGAGAGGCCAAGGAGTGCGGGTAGTAGTATGTCAATAGACATTAACATTGATCTACACACTCGTCCACGACATTGGTCAATGGATGAAAGAGACATGGCAGGGCTTGTGGCAATGGATGTGACTAAACAAGATCCTGATGTATCAGATTGCCTCGGGACATCAGCTCCTCAATCCTCAAAAGAACTTGAAGCCGAGATGAAAAGATTGAGGCTTGAACTGAAGCAAACTATGGACATGTACAGCTCAGCTTGCAAGCAAGCAATCTCAGCCAAAAATCAGGCAGAACAGATTCGTCAATGGAAAATGGAAGAGGACCGTAAGGTTGAGGTAGTTAGGTTGTCTCAAGAGGCAGCTCTTGCACTGGCAGAAAGGGAGAAGGCTAGAGCCAAAGCTGCATTGGAAGCAGCTGAGGAAGCCAGGAGGAGGGCTGAACAGGAAGCACAGAGAAGAAAGGATGCAGAGATGAAGGCCAGGATAGAGGCAGAAGAGAAGGAACGAGCATTATCTGCGTTGGTTCAAAATGATAACCGGTATAGAAAATACACCATAGAGGAGATTGAAGCAGCCACAGAAAAGTTCTCCCCATTAAACAAAATTGGTGAAGGTGGTTATGGACCTGTGTATAAAGGCCACCTTGATCACACCCCAGTTGCAATCAAAATTTTAAGGCCTGATGCCGCTCAGGGAATGAAGCAGTTCCAGCAAGAGATTGAAGTACTAAGCTGCATTAGACATCCGCATATGGTCCTCCTCCTTGGTGCATGTCCTGAGCATGGGTGCTTGGTGTATGAATACCTGGATTATGGTAGCTTAGAAGATAGATTATACCAAAAAAACAACAGCAGGCCAATTTCATGGAGGAAACGGTTCCAAATAGCTGCTGAGATAGCAACTGCACTCCTCTTCTTACACCAAAACAAGCCAGAGCCTATTGTGCACCGAGACCTTAAACCATCAAACATTCTCTTGGACAGGAATTACGTGAGTAAAATCAGTGATGTTGGTCTGGCACGGTTAGTCCCCGCTTCTGTGGCTGATACCGTGACACAATATTACATGACTTCCGCTGCTGGAACCTTTTGTTACATTGATCCTGAGTATCAACAAACGGGGATACTAACAACAAAGTCAGATGTATATTCACTGGGGATAATGCTGCTGCAGATAATCACAGCCAAGCCTCCAATGGGTCTTGCTCACCAAGTTAGGAAGGCAATTGAAAAGGGTAGGTTTGAAGAGATGCTTGACCCCGTGGTCACTGATTGGCCAGTTGAAGAGGCTCTATCATTTGCCAAATTAGCATTGAACTGTGCAGAACTCAGCAAGAAGGACAGGCCAAATCTTGCAACAGTTGTGTTACCAGAGCTTAACAGGTTGAGCGAACTTGAATTGACTTTACACAATGATCAAGTCTTTTTTAGCAGTGATGATATGATCAATAGCTATGCCACACGCCCTCCCACACCTCCACGAAGTCAATACTCTGACTCAGAGACGCTCTATAGGACCTAG	2148	0.453	MSVQQPCAASLQNITMVAVDKDKNSAHAFRWAVNHLDNPVIIAVHVKHKNFSHHVTNVFPPDEEDVANIFNNLRGMCNRKAVTMKEAVVDDSDVVRGLLEFANRNAIHSIVVGASAKNPLTSLKMFKAYQYQDIPTAMIKSAPDYCSVYIISKLKIVSARSAVRSKSFVAPKQLPVQACPHSEPEGGSVRGQPPRSRGTYEGAAEQMRIQARERPRSAGSSMSIDINIDLHTRPRHWSMDERDMAGLVAMDVTKQDPDVSDCLGTSAPQSSKELEAEMKRLRLELKQTMDMYSSACKQAISAKNQAEQIRQWKMEEDRKVEVVRLSQEAALALAEREKARAKAALEAAEEARRRAEQEAQRRKDAEMKARIEAEEKERALSALVQNDNRYRKYTIEEIEAATEKFSPLNKIGEGGYGPVYKGHLDHTPVAIKILRPDAAQGMKQFQQEIEVLSCIRHPHMVLLLGACPEHGCLVYEYLDYGSLEDRLYQKNNSRPISWRKRFQIAAEIATALLFLHQNKPEPIVHRDLKPSNILLDRNYVSKISDVGLARLVPASVADTVTQYYMTSAAGTFCYIDPEYQQTGILTTKSDVYSLGIMLLQIITAKPPMGLAHQVRKAIEKGRFEEMLDPVVTDWPVEEALSFAKLALNCAELSKKDRPNLATVVLPELNRLSELELTLHNDQVFFSSDDMINSYATRPPTPPRSQYSDSETLYRT	715

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo10g00242	715	SUPERFAMILY	Protein kinase-like (PK-like)	388	664	IPR011009	-
	Pumo10g00242	715	FunFam	U-box domain-containing protein 51	478	677	-	-
	Pumo10g00242	715	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	378	477	-	-
	Pumo10g00242	715	Coils	Coil	322	376	-	-
	Pumo10g00242	715	MobiDBLite	consensus disorder prediction	694	715	-	-
	Pumo10g00242	715	ProSiteProfiles	Protein kinase domain profile.	405	668	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo10g00242	715	Gene3D	Phosphorylase Kinase; domain 1	374	477	-	-
	Pumo10g00242	715	CDD	STK_N	17	153	-	-
	Pumo10g00242	715	Gene3D	Transferase(Phosphotransferase) domain 1	478	688	-	-
	Pumo10g00242	715	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	523	535	IPR008271	GO:0004672\|GO:0006468
	Pumo10g00242	715	Coils	Coil	271	291	-	-
	Pumo10g00242	715	Pfam	Universal stress protein family	16	121	IPR006016	-
	Pumo10g00242	715	SMART	serkin_6	405	668	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo10g00242	715	Pfam	Protein kinase domain	408	662	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo10g00242	715	Gene3D	HUPs	9	127	IPR014729	-
	Pumo10g00242	715	PANTHER	OS02G0152300 PROTEIN	15	677	-	-
	Pumo10g00242	715	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	16	123	-	-
	Pumo10g00242	715	MobiDBLite	consensus disorder prediction	177	201	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo10g00242	Pumo-Chr10	3291283	3295088	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo10g00242	84	674	Receptor kinase-like Gene Family	AT5G12000	59.157	0.0	695

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Pumo10g00242		Pkinase	2.7e-42	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo10g00242	-		-	gmx:100798861	1231.47