Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00238 ATGGAGGAGATGTCAACCACGGTTGCAGTGCCATTGGGAGTAGGTAATTCAGTGTGTGATAAGCCAACCATAGCTACCCACAAGGATGTATCAAGAATTAAGCTGATGGCAGATGCAGGGTTGTTATCCAATTCTATAACTAAGGTTTCCAATGAGACTTTTATAGGTTCGGATGAGGATCATGGCAGTGGTCGTCATGAGGATGAAGTTGGTATTACAGCAGTCACAGCTCCAGAACAGGGAAGAGAAGGAGAAATTCCGATGTTGGATATGATATCCCAAAATATAAGCTCTCTGGTTGTTGGTGATGAAGTTTTAACCCCAGAAATTGAGGAGGATGATTTGATATCACTGGAAGGTGATCCAATTATTGATAGCTCTTCACTTTCAGTAGCCAGTGAGAATAGTAGTGTTTGTGGAGATGAGTTCATCAGTTCTGAGGTTTCTTCAGATTTAGGGACAACAAGTTCCATAGACATAGGGAAGAGCATCTCCACTGTCAAAATTGCAGCCAGGGCTACTGATTTGGGTGCATCAAATGTAGAGGCAGATGTAGCAGCGAGCCTTGAAGAGACAGGAGTTAGATCTGGCCAAAAGCCTACTACAGGTGTTTTTCATCAACTAACTCTGGAAAGATCTGTGAGTGGAACAGTTGGTAGAAGTGTTTTTGAATTAGATTGTACCCCACTTTGGGGATTTACATCTGTGTGTGGAAAAAGGCCTGAGATGGAAGATGCAGTCGCAACTGTACCTCGTTTTTTGAAAATTCCTATTCAAATGCTAATTGGTGATAAGGTACCTGATGGAATAAACAAATGTTTCAGTCAGCAGATAATACATTTCTTTGGAGTCTATGATGGCCATGGTGGCTCTCAGGTGGCAAATTATTGCCGTGAGCGCATGCATTTGGCCTTGGCTGAGGAAATAGAATCTGTCAAGGAAGGTCTATTAGTTGAAAATACCAAGGATGATTGTCGAGATCTGTGGAAAAAAGCTTTCACCAATTGTTTTCTGAAGGTTGATGCTGAAGTTGGGGGGGAAGTTAATTGTGATCCTGTTGCCCCAGAAACTGTTGGATCCACTTCTGTTGTTGCTATTATCTGTTCATCTCATATCGTAGTTTCAAACTGTGGTGATTCAAGAGCGGTTCTCTGTCGTGGCAAAGAACCCATGGCGCTATCTGTTGATCATAAACCAAATCGAGATGATGAATATGCAAGAATTGAGGCCGCTGGAGGCAAGGTGATACAATGGAATGGTCACCGAGTATTTGGTGTTCTAGCAATGTCAAGGTCTATTGGTGATAGGTATTTGAAGCCATGGATTATTCCGGACCCCGAGGTGACGTTTCTTCCTCGTGCGAAAGATGATGAATGCCTCATTCTGGCCAGTGATGGCCTGTGGGATGTCATGACCAATGAAGAGGTGTGTGACATTGCTCGACGGCGCATACTTCTCTGGCACAAGAAAAATGGCTTGGCACTGCCCTCAGAAAGGGGAGAGGGAATTGATCCTGCTGCACAAGCAGCTGCAGAGTACCTATCAAACCGTGCTCTTCAGAAAGGAAGCAAAGACAACATCACTGTGATTGTGGTGGATTTGAAAGCTCAAAGAAAATTTAAGAGCAAGACATGA 1635 0.4355 MEEMSTTVAVPLGVGNSVCDKPTIATHKDVSRIKLMADAGLLSNSITKVSNETFIGSDEDHGSGRHEDEVGITAVTAPEQGREGEIPMLDMISQNISSLVVGDEVLTPEIEEDDLISLEGDPIIDSSSLSVASENSSVCGDEFISSEVSSDLGTTSSIDIGKSISTVKIAARATDLGASNVEADVAASLEETGVRSGQKPTTGVFHQLTLERSVSGTVGRSVFELDCTPLWGFTSVCGKRPEMEDAVATVPRFLKIPIQMLIGDKVPDGINKCFSQQIIHFFGVYDGHGGSQVANYCRERMHLALAEEIESVKEGLLVENTKDDCRDLWKKAFTNCFLKVDAEVGGEVNCDPVAPETVGSTSVVAIICSSHIVVSNCGDSRAVLCRGKEPMALSVDHKPNRDDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVTFLPRAKDDECLILASDGLWDVMTNEEVCDIARRRILLWHKKNGLALPSERGEGIDPAAQAAAEYLSNRALQKGSKDNITVIVVDLKAQRKFKSKT 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00238 544 ProSitePatterns PPM-type phosphatase domain signature. 281 289 IPR000222 GO:0043169
Pumo10g00238 544 Pfam Protein phosphatase 2C 259 527 IPR001932 -
Pumo10g00238 544 SUPERFAMILY PP2C-like 226 535 IPR036457 -
Pumo10g00238 544 SMART PP2C_4 220 532 IPR001932 -
Pumo10g00238 544 FunFam Protein phosphatase 2C 16 218 544 - -
Pumo10g00238 544 Gene3D - 217 544 IPR036457 -
Pumo10g00238 544 PANTHER PROTEIN PHOSPHATASE 183 534 IPR015655 GO:0004722|GO:0006470
Pumo10g00238 544 CDD PP2Cc 232 534 IPR001932 -
Pumo10g00238 544 ProSiteProfiles PPM-type phosphatase domain profile. 230 534 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00238 Pumo-Chr10 3251368 3257166 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00238 1 544 PP2C-type Phosphatase Gene Family AT1G17550 48.474 8.66e-165 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00238 K14497 - gmx:100803321 1025.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00238 10 3251368 3257166 Pumo10g00238 10 3251368 3257166 ECH
Pumo10g00238 10 3251368 3257166 Pumo9g00532 9 8499219 8508035 ECH