Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00227 ATGGATAATAATAACAACTCCAATGCTAATTACATTGCCGGCGATGATGAATTTTTCCAAAACTTGATGGAAGCGGACGAACTTTACTATGTATCCAGAGAAGAACTCATTGCACAACAACAACAAAATGATCCTTTTGTCATTGGACAGGGTAATGTTCCCTTCCAAGATCAATTCATGGAGGGCAATGATAATGATAATAATTTTCTTCCCATTGGAGGAGGAGTTCCTAACGTCGATGTTGAGGGTCCATTATTGATGCCCCAAGGCCAAGGTCAATTCTTCATGCATGGCAATAATAATAATTTTTTCGATGGAGGAGGAGTTGGTAACGTTGAACCGGGTCCATTCCCGCAAGAGAGTCAAACTCACCCGGAAAATGGGTACTTGGATGCACAGAATGACCAAGATGTGAGGCCACTTAGTCCTTGGCCCCCGCCACCACAGCCATTCTCTTGCAGTTGCTGTCAAGTTCTCAGACAAATAAATCACACCAATGGTTTTAGGTTTGACAAGCTTGAGATTCATGGAACGGTCGGGGTAATTAACCACGCAATATGCCACGTTAAGGATAACACACCGGATCGTCCTCCAAGTGATACTTATCAAATGATTGAATTCTGCCACAGAAGCACAGAAGAAATAAGGAGTTTCCTAAAATATTACTGTAAAGAGCGGATTGAGTCAGGGTTCATTCCCATAGAAGATCCGTCGTTGTCTGCCTTTTATGATGCCCTCTGCACTGGACTGGATTGGACTGAATATCCCAATGACGAAGACGATGATTTGAGACCACGTTGTAGTTGTGTTTGTATTGCACAGAGGCAGAGAGTAGCATTGATGACATTGAATGATTTGAGTGGTGTCTTCCATATGACTATGGTCGCTGCAGGGACTGAACTGGAGATAAGCGTCTCTGCCTTGAAGAAAGTCTGCCGCAAGGGAGGCTTATATAGATGGCCCCAAAGAAAGGTAACAAGCAATGTGAAGAAGGTGAACGTACTCAAAAGAAAATTGACTTCAAAAGATCCAACGGTAGTTCAAAGAACTCGAGAGGAAATTCAGAGACTTCAACAAGAAATGATTGAGCATTGTAATGGAATTGTCCCAACTGGAATAGAAATCCTCCAATTTTGA 1137 0.4248 MDNNNNSNANYIAGDDEFFQNLMEADELYYVSREELIAQQQQNDPFVIGQGNVPFQDQFMEGNDNDNNFLPIGGGVPNVDVEGPLLMPQGQGQFFMHGNNNNFFDGGGVGNVEPGPFPQESQTHPENGYLDAQNDQDVRPLSPWPPPPQPFSCSCCQVLRQINHTNGFRFDKLEIHGTVGVINHAICHVKDNTPDRPPSDTYQMIEFCHRSTEEIRSFLKYYCKERIESGFIPIEDPSLSAFYDALCTGLDWTEYPNDEDDDLRPRCSCVCIAQRQRVALMTLNDLSGVFHMTMVAAGTELEISVSALKKVCRKGGLYRWPQRKVTSNVKKVNVLKRKLTSKDPTVVQRTREEIQRLQQEMIEHCNGIVPTGIEILQF 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00227 378 PANTHER PROTEIN RKD4 104 361 IPR044607 GO:0003700
Pumo10g00227 378 Coils Coil 347 367 - -
Pumo10g00227 378 Pfam RWP-RK domain 281 327 IPR003035 -
Pumo10g00227 378 ProSiteProfiles RWP-RK domain profile. 268 349 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00227 Pumo-Chr10 3057007 3058785 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00227 253 327 AtRKD Transcription Factor Family AT4G35590 32.500 5.96e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Pumo10g00227 RWP-RK 3.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00227 - - gmx:100784971 400.208