Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00222 ATGGATGTTAATAATAAGCAGCAAGGTCTGAAAGGCGGTGAAGTAAGCATGGCTGAGAAGAAAAGGGAAGTGATGGTGGCGATTCCCAATGAGGGTGGTGCCGAATCTTTGATGCCAAAGCAGCAGAGCAGGGTGAATTCGCCTCATAGAATATTAAACGACAGCGAGGTTGCTGCAAAGTCGCCACCTTTGAACTGTGCTTCCCCTGAGATAAGGTTCATGCCAAGCCCAAACAAACCCCCAAAAGTTCCCACTTCCATTGCCAACCTCACTCGGCGAAAATCACTCACAAGGTCAGTGTATTCCAAACCCAAATCAAGGTTTGGTGAACAGCCTTACCCCGTTGATGGGACCCTTTTGGAAGAGAATGCAACCTCAACTTTGCACGAAAATTTGACTGTTGGATCACCATATAAAGCATCACCTAATAACAACAAACCTGGGACTGTTACTAGAACAGTCTCCATCCTTTCTGTGATCACTCCCAAGACGCCGTTGATGGCGTCTCCCGGGCCGGCCGGGGAGGATTTCGATGAAATCATTTACAAGAAGGTTGAATTGAGTAAAAGCAAGCGTAGTAGGAGACTGACAGCTAAGGTTTTGTTTGAATGGTTTGTGTTTGTGTGCATTGCAAGTAGCTTGGTGGCTAGTTTAACTGTTGGAAAACTCAAAAGGACCGAGATTTGGGGTTTGGGGTTTTGGAGGTGGTGTGTGCTTGTGATGGTGACCTTTTGTGGCATGTTGGTTACTAGATGGTTTATGCTCATTGTTGTTTTCTTGATTGAGACCAACTTTTTGTTGAGGAAAAAGGTGCTGTATTTTGTCCATGGACTGAAGAAGTGTGTCCAGTTCTTCATTTGGCTTGGTTTGGTTCTCCTCACATGGGTGCTGTTGATTAACCGTGGGGTCCACCGGACTGAATTGGCCTCAAAGATTTTGAATGGGGTAACATGGACTCTTGTTTCCCTCCTCATTGGAGCATTTTTGTGGTTCGTGAAGACATTGTTGTTGAAGATCTTGGCGTCGAATTTCCATGTTAAGTCTTTCTTCGATCGAATTCAAGAATCACTCTTCCATCAGTACATTCTGCAGACTCTCTCTGGGCCTCCACTTGTAGAAGAGGCTGAGAAAGTGGGGGCATCGCACAGTGTTGGTCGTTTTAGTTTCAGGAGTACAGATGGTAAAGGTGGCACAAAGAAAGAGACTATTGATATCGCAAAGCTTCACCAGATGAAACAAGAGAAGGTTTCTGCATGGACTATGAAGGTTTTGGTAGATGCAATGACAAATTCAGGGCTGTCCACAATCTCTAGTGCACTAGATGAAAGCTTTGATGAAGGAGAAAATGAACAAACTGATAAAGAGATTACTAATGAGATGGAAGCAACTGCTGCAGCCTATTACATTTTCAGGAATGTTGCTGCCCCTGGTTGCACGTACATTGATGAGGATGAACTTCGGAGGTTCATGATTAAGGAAGAAGTGCGGATGGTATATCCCCTACTGGCTGAAGCAGAAACAGGGCAGATTACCAGAAAGTCCTTAACAGACTGGTTGTTGAAGGTATATCAGGAACGCAAAGCATTGGCACATGCCTTAAGTGACACCAAAACAGCTGTGAAGCAACTAAACAAGCTCGTGACAGTAATCCTAGTAGTGGTGACCGTAATTGTGTGGCTTCTACTAATGGAGATTGCAACAACAAAAGTACTTGTGTTCCTCTCATCGCAGCTAGTACTTGCAGCTTTCATGTTTGGAAACACTTGCAAGAACATATTTGAAGCTATCATCTTCGTGTTTGTGATGCATCCATTTGATGTTGGTGATCGTTGTGTTATTGATGGTGTTGAGCTATTGGTTGAAGAAATGAATATATTGACCACAGTCTTCTTGAAGCTTAATAATGAAAAGGTGTACTATCCAAACTCTGTCCTGGCCACAAAACCGATTAGCAATTATTACAGAAGCCCGGATATGGGTGACCGTGTAGAGTTCTCGATGGATTTTACAACACCAGCTGAGAAAATTGGGGCATTGAAAGAAAGAGTAAAGAGGTACCTGGAGAGAAATCCACAATACTGGCATCCTAATCATGGCTTAGTAGTGAAGGACATTGAAGACGTAAACAAGATTAAGATGGGTATCTACGTTACCCACACAATGAACTTTCAAGAGTTTGGGGAGAAAAACAAGCGAAGAACAGAACTTGTACTGGAAATAAAGAAAATATTTGAAGAGCTGAATATCAGATACAACCTTCTTCCTCAAGGAGTTCATATCAGACATATGGAACCAGACCCGAGGGTGCTCAATATGTGA 2319 0.4329 MDVNNKQQGLKGGEVSMAEKKREVMVAIPNEGGAESLMPKQQSRVNSPHRILNDSEVAAKSPPLNCASPEIRFMPSPNKPPKVPTSIANLTRRKSLTRSVYSKPKSRFGEQPYPVDGTLLEENATSTLHENLTVGSPYKASPNNNKPGTVTRTVSILSVITPKTPLMASPGPAGEDFDEIIYKKVELSKSKRSRRLTAKVLFEWFVFVCIASSLVASLTVGKLKRTEIWGLGFWRWCVLVMVTFCGMLVTRWFMLIVVFLIETNFLLRKKVLYFVHGLKKCVQFFIWLGLVLLTWVLLINRGVHRTELASKILNGVTWTLVSLLIGAFLWFVKTLLLKILASNFHVKSFFDRIQESLFHQYILQTLSGPPLVEEAEKVGASHSVGRFSFRSTDGKGGTKKETIDIAKLHQMKQEKVSAWTMKVLVDAMTNSGLSTISSALDESFDEGENEQTDKEITNEMEATAAAYYIFRNVAAPGCTYIDEDELRRFMIKEEVRMVYPLLAEAETGQITRKSLTDWLLKVYQERKALAHALSDTKTAVKQLNKLVTVILVVVTVIVWLLLMEIATTKVLVFLSSQLVLAAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVIDGVELLVEEMNILTTVFLKLNNEKVYYPNSVLATKPISNYYRSPDMGDRVEFSMDFTTPAEKIGALKERVKRYLERNPQYWHPNHGLVVKDIEDVNKIKMGIYVTHTMNFQEFGEKNKRRTELVLEIKKIFEELNIRYNLLPQGVHIRHMEPDPRVLNM 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00222 772 PIRSF Memb_At2g17000 13 770 IPR016688 -
Pumo10g00222 772 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 78 766 IPR016688 -
Pumo10g00222 772 Pfam Mechanosensitive ion channel 544 750 IPR006685 GO:0016020|GO:0055085
Pumo10g00222 772 FunFam Predicted mechanosensitive ion channel 604 653 - -
Pumo10g00222 772 Gene3D - 604 653 IPR023408 -
Pumo10g00222 772 SUPERFAMILY Sm-like ribonucleoproteins 594 653 IPR010920 -
Pumo10g00222 772 MobiDBLite consensus disorder prediction 96 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00222 Pumo-Chr10 3011906 3015906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00222 59 760 Mechanosensitive Ion Channel Family AT5G12080 60.169 0.0 841
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00222 K22048 - gmx:100803107 1405.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00222 10 3011906 3015906 Pumo10g00222 10 3011906 3015906 ECH