Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00209 ATGGTTATGGCTACTCATCTCTTCACACTTTCTCTCTCCTTGCAACCCAAGCTCTGCTTCAATTACCCGCCCAATCATGCACTCCACTTCGTTTCTCCGCTGCCGGCAAAACGACGTCGCAGCCGCAACCGCCACCGCGTTGAAATTCTCCGGCCACGGTTCTCCGTATCGAACTCCTTCGGGACCGAGGTTGGCTCGCCGGAATCGGCTCTTCTCCAAGGCCGGAGAGAGAGCAAAGACTCGCCGGTTCTGCTCGACGTCACCGGAATGATGTGCGGCGCGTGCGTCTCCCGAGTCAAAAACATCCTGTCCGCTGACGACCGAGTCGACTCGGCAGTGGTCAACATGTTGACCGAGACCGCCGCCGTCAAGCTGCGGCGGATCGAGGAGGAGCCGGCGAGCGTCGCGGAGAGCCTCGCTCGGAGACTGAGCGATTGCGGATTTCCGACGAAGAGGAGGGCGTCGAGTTCGGGAGTGACGGAAAACGTGAGGAAGTGGAAGGAGTTGCTGAAGAAGAAGGAGGAATTGGTCGTTAAGAGTCGAAGCCGCGTGGCGTTCGCCTGGACATTGGTCGCATTGTGCTGTGGATCGCACGCTTCGCATATTTTCCACTCCTTGGGGATTCACATTGCTCACGGACCGGTTATGGAGATTCTTCATAGTTCATACTTGAAAGGTGGTTTAGCTTTGGGGGCTCTACTGGGACCAGGACGAGAGTTACTTTTTGATGGATTAAACGCATTTAAGAAGGGGTCGCCTAATATGAACTCTCTCGTGGGATTTGGTTCTATAGCTGCATTCATCATTAGTTCGATCTCACTACTTAACCCCGGCCTGGCATGGGATGCATCATTCTTTGATGAACCGGTCATGCTTCTTGGTTTCGTGCTTCTGGGACGTTCTCTGGAGGAAAAGGCAAGGATTCAGGCATCCAGCGATATGAATGAACTGCTTTCACTGATATCTACCCAGTCAAGACTTGTGATTACTTCAACAGAAGCTTCACCTTCTACTGACACTGTGCTTTGCTCTGATGCAATTTGTGTTGAAGTCCCAACTGATGATATTCGAGTAGGTGATTCAGTGTTGGTGTTGCCTGGAGAAACTATTCCTATAGATGGAAGGGTCATTTCAGGAAGAAGTGTTGTAGATGAATCCATGCTTACAGGGGAATCACTTCCTGTATTTAAGGAGAAAGGCCTCACAGTTTCAGCAGGAACTATAAATTGGGATGGTCCTTTAAGGATTGAAGCTTCTTCAACTGGATCCAACACTATGATATCCAAGATTGTACGCATGGTTGAGGATGCTCAATCACGTGAAGCACCTGTACAAAGGCTTGCAGATTCGATAGCAGGGCCATTTGTATATAGCGTAATGACTCTGTCAGCAGCAACATTTGCATTTTGGTATTTTGTTGGATCACACATATTTCCCGATGTTTTGCTCAACGATATTGCGGGTCCAGAAGGAGATCCTTTGCTTCTGAGTTTAAAACTATCTGTAGATGTTTTGGTTGTTTCTTGTCCTTGTGCATTGGGTCTTGCTACACCCACAGCAATCCTGGTTGGCACTTCACTTGGGGCAAGAAAAGGACTTCTTATTAGGGGAGGGGATGTGCTGGAACGCTTGGCTGGAATAAATTATATTGCTCTAGACAAGACAGGTACCCTCACCAAAGGAAAACCAGTTGTGTCGGCAATAAGCTCTATCCATTACGGAGAATCTGAAATTCTTCAGATTGCTGCTGCAGTGGAGAAAACTGCATCTCACCCAATAGCAAAGGCTATTGTCAATAAAGCTGAGTCATTGGAGTTGATCCTTCCAGTCACAAAGGGCCAGTTAGTTGAACCAGGTTTTGGAACTTTAGCAGAAATAGATGGGCGTTTGATTGCAGTTGGGTCTTTAGAATGGGTTCGTGAACGCTTCCAGACAAGAGTGAACCCGTCTGATTTGACAAATATGGAACATAGTTTGATGAATCATTCATCAAATACGTCTTCAAAGTATTCAAAAACTGTTGTCTATGTTGGACGTGAAGGAGAAGGCATCATTGGTGCTATTGCCATATCTGACACTGTGCGTGAAGATGCTGAATCTAGTGTAATGAGGCTCAAGCAGAAGGGGATTCAAACGGTCCTCTTGTCAGGAGACAGGGAAGAGGCAGTTGCAACAGTAGCAGATACAGTTGGAATTGAAAATGATTTTGTCAAAGCATCTTTGTCTCCACAACAGAAATCTAGATTTATTTCCTCTCTGAAAGCTGCCGGACATCATGTTGCGATGGTAGGTGATGGGATAAATGATGCACCCTCTTTGGCTGTAGCTGATGTTGGGATCGCTCTGCAGAATGAAGCTCAAGAGAATGCCGCCTCGGATGCAGCATCTATTATACTTCTGGGGAACAAAATTTCACAAGTTGTCGATGCGTTAGACCTAGCACAGGCAACGATGGCAAAAGTGTATCAAAATTTGTCTTGGGCGGTCGCCTATAATGTTGTTGCCATTCCAATTGCTGCTGGTGTGTTACTTCCCCATTTTGACTTTGCTATGACACCGTCACTTTCAGGAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTGGCAACTCACTGCTTCTACAGCTTCATGGGTCTCGGATCTCTAGAAAGGGCCAACTCTAG 2664 0.4752 MVMATHLFTLSLSLQPKLCFNYPPNHALHFVSPLPAKRRRSRNRHRVEILRPRFSVSNSFGTEVGSPESALLQGRRESKDSPVLLDVTGMMCGACVSRVKNILSADDRVDSAVVNMLTETAAVKLRRIEEEPASVAESLARRLSDCGFPTKRRASSSGVTENVRKWKELLKKKEELVVKSRSRVAFAWTLVALCCGSHASHIFHSLGIHIAHGPVMEILHSSYLKGGLALGALLGPGRELLFDGLNAFKKGSPNMNSLVGFGSIAAFIISSISLLNPGLAWDASFFDEPVMLLGFVLLGRSLEEKARIQASSDMNELLSLISTQSRLVITSTEASPSTDTVLCSDAICVEVPTDDIRVGDSVLVLPGETIPIDGRVISGRSVVDESMLTGESLPVFKEKGLTVSAGTINWDGPLRIEASSTGSNTMISKIVRMVEDAQSREAPVQRLADSIAGPFVYSVMTLSAATFAFWYFVGSHIFPDVLLNDIAGPEGDPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGARKGLLIRGGDVLERLAGINYIALDKTGTLTKGKPVVSAISSIHYGESEILQIAAAVEKTASHPIAKAIVNKAESLELILPVTKGQLVEPGFGTLAEIDGRLIAVGSLEWVRERFQTRVNPSDLTNMEHSLMNHSSNTSSKYSKTVVYVGREGEGIIGAIAISDTVREDAESSVMRLKQKGIQTVLLSGDREEAVATVADTVGIENDFVKASLSPQQKSRFISSLKAAGHHVAMVGDGINDAPSLAVADVGIALQNEAQENAASDAASIILLGNKISQVVDALDLAQATMAKVYQNLSWAVAYNVVAIPIAAGVLLPHFDFAMTPSLSGGLMALSSIFVVGNSLLLQLHGSRISRKGQL 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00209 887 FunFam Copper-transporting ATPase 1, putative 307 438 - -
Pumo10g00209 887 SUPERFAMILY Calcium ATPase, transmembrane domain M 285 545 IPR023298 -
Pumo10g00209 887 Gene3D - 76 154 - -
Pumo10g00209 887 SUPERFAMILY HAD-like 549 871 IPR036412 -
Pumo10g00209 887 ProSitePatterns E1-E2 ATPases phosphorylation site. 553 559 IPR018303 -
Pumo10g00209 887 FunFam Copper-transporting ATPase PAA2, chloroplastic 562 694 - -
Pumo10g00209 887 Pfam haloacid dehalogenase-like hydrolase 547 777 - -
Pumo10g00209 887 SUPERFAMILY Calcium ATPase, transduction domain A 344 434 IPR008250 -
Pumo10g00209 887 NCBIfam heavy metal translocating P-type ATPase 255 874 IPR027256 GO:0006812|GO:0016020|GO:0019829
Pumo10g00209 887 FunFam Copper-transporting ATPase PAA2 chloroplastic 80 153 - -
Pumo10g00209 887 SFLD p-type atpase 534 816 IPR044492 -
Pumo10g00209 887 Pfam Heavy-metal-associated domain 85 148 IPR006121 GO:0046872
Pumo10g00209 887 Pfam E1-E2 ATPase 335 531 - -
Pumo10g00209 887 CDD P-type_ATPase_HM 183 873 - -
Pumo10g00209 887 NCBIfam HAD-IC family P-type ATPase 335 852 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pumo10g00209 887 ProSiteProfiles Heavy-metal-associated domain profile. 81 151 IPR006121 GO:0046872
Pumo10g00209 887 Gene3D - 562 694 IPR023299 GO:0000166
Pumo10g00209 887 PRINTS P-type cation-transporting ATPase superfamily signature 686 697 - -
Pumo10g00209 887 PRINTS P-type cation-transporting ATPase superfamily signature 708 718 - -
Pumo10g00209 887 PRINTS P-type cation-transporting ATPase superfamily signature 551 565 - -
Pumo10g00209 887 PRINTS P-type cation-transporting ATPase superfamily signature 763 782 - -
Pumo10g00209 887 PRINTS P-type cation-transporting ATPase superfamily signature 384 398 - -
Pumo10g00209 887 SFLD C1.7: P-type atpase like 534 816 - -
Pumo10g00209 887 PANTHER ATP7, ISOFORM B 78 876 - -
Pumo10g00209 887 Gene3D - 307 438 - -
Pumo10g00209 887 CDD HMA 85 149 IPR006121 GO:0046872
Pumo10g00209 887 SUPERFAMILY HMA, heavy metal-associated domain 83 148 IPR036163 GO:0046872
Pumo10g00209 887 Gene3D - 542 814 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00209 Pumo-Chr10 2916788 2926844 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00209 246 875 Primary Pumps ATPases AT1G63440 37.129 8.72e-115 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00209 K17686 - gmx:100127402 1546.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00209 10 2916788 2926844 Pumo10g00209 10 2916788 2926844 ECH