Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00208 ATGGCGTTTCGGTTTGGACTCCTCTTTGTAGTTTTTCTCCTTTGTTTGGATTCAACCAGTTCGGTGAATTCACACGACGGAGAAACGTTGATGGAGATAAAGAAGTCGTTCAAGGATGTGGATAACGTTCTGTATGACTGGACAGACTCACCTTCTTCAGATTATTGTGTATGGAGAGGGGTTGCGTGTGATAATGTCACTTTCAACGTGGTTGCACTCAATCTTTCAGGGTTGAATCTTGAGGGTGAAATTTCACCTGCAATAGGGAGACTTAACAGCTTGGTCTCTATTGATTTCCAGGAAAACCGTTTATCTGGGCAGATACCTGACGAGCTTGGTGATTGTTCCTCTTTGAAAAGCATAGACTTGTCATTTAATGAGATTCGGGGTGATATACCGTTTTCAGTTTCGAAGATGAAACGTCTGGAAAATCTAATTTTGAAAAATAATCAGCTAATTGGACCAATTCCTTCAACTCTCTCTCAGATTCCTAACTTGAAGATTCTAGACCTGGCACAAAATAATCTTAGCGGGGAGATACCAAGACTTATATATTGGAATGAAGTTTTGCAATATCTTGGCCTGCGAGATAACAATTTGGTGGGTTCACTTTCTCCAGACATGTGCCATTTAACTGGATTGTGGTATTTTGATGTGAGAAACAATAGCTTGACGGGCAGTATTCCTGAAAACATAGGCAATTGTACTACTTTCCAGGTCTTGGATTTATCCTACAACAAGCTAACTGGAGAGATACCATTCAATATTGGGTTTCTACAAGTAGCAACTCTGTCATTGCAAGGCAATAAACTCTCAGGGCATATTCCATCAGTGATTGGTCTGATGCAAGCGCTTACTGTCTTAGATTTGAGTTGTAACATGTTAAGTGGACCAATCCCTCCTATCTTGGGAAATTTGACCTACACTGAAAAATTGTATCTGCATGGAAACCAGCTGACTGGTCTCATCCCCCCAGAGCTTGGAAATATGACAAAGCTTCACTATTTGGAACTGAATGACAACCATTTAAGTGGACATATCCCACCTGAGCTTGGAAAGCTTACTGATTTGTTTGACTTAAATGTTGCCAACAACAACCTTGAGGGTCCAATTCCTGATAATCTTAGCTCGTGTAAAAACCTCAACAGCCTCAATGTGCATGGGAATAAGCTGAGTGGAACAGTCCCCTCAGCTTTTCATAGCTTGGAGAGTATGACCTATCTGAATCTTTCTTCAAACAATCTTCAAGGCTCCATTCCAATTGAACTTTCACGGATTGGTAATTTGGATACACTGGATATATCAAATAATAATATAATTGGTTCCATTCCTTCTTCCATTGGTGACTTGGAACATCTTTTGAAGTTGAATTTGAGTAGAAATCATTTAACAGGGTTTATTCCAGCAGAATTTGGTAATCTAAGAAGTGTCATGGATATCGATCTTTCAAATAATCAACTCTCTGGCTTGATTCCTGAAGAACTTAGTCAGCTTCAGAATATGATATCCTTGAGACTAGAAAAGAACAAATTATCAGGGGATGTGTCTTCACTTGTAAATTGCCTTAGTCTTTCTCTACTTAATGTCTCTTATAACAATCTAGTTGGTGTTATTCCCACAAGCAAGAATTTTTCCAGGTTTTTCTCTGACAGTTTTATTGGAAATCCTGGTCTTTGTGGCGAATGGCTGGATTCGTCTTGTCATGGGTCTCACCCTACAGAGCGAGTTACCTTGTCCAAGGCAGCTATCCTAGGAATTGCAATAGGCGCCCTTGTGATTCTTTTTATGATATTGCTAGCAGCTTGCCGACCACACAATCCAGCTTCTTTCTCTGATGGATCTTTTGACAAATCAGTTAATTACTCACCTCCGAAGCTAGTGATTCTTCACATGAATATGGCACTTCATGTGTATGATGATATCATGAGGATGACTGAAAACCTAAGTGAGAAGTATATAATTGGGTATGGTGCATCGAGTACAGTTTATAAATGTGTTCTTAAGAATTGCAAGCCAGTCGCTATCAAGAAGCTCTATTCCCACTATCCGCAATATCTGAAAGAGTTTGAGACTGAGCTTGAGACAGTTGGGAGCATTAAGCACAGGAATCTGGTCAGTCTCCAAGGCTACTCTTTGTCTCCATATGGAAACCTTCTCTTTTATGACTACATGGAAAATGGCAGTCTATGGGATCTTCTACATGGACCTACCAAGAAGAAAAAGCTTGATTGGGATCTTCGTCTAAAAATAGCACTTGGATCAGCCCAAGGGCTTGCTTATCTACACCACGATTGCAGTCCACGGATCATTCACAGGGATGTGAAATCATCTAATATTTTATTAGACAAAGACTTTGAGCCCCATCTCACTGATTTTGGCATTGCAAAAAGTCTATGCCCATCTAAGACCCACACTTCAACTTACATAATGGGCACAATTGGCTACATAGACCCCGAGTATGCTAGAACTTCCCGGCTCACTGAGAAGTCTGATGTGTATAGCTATGGTATTGTATTGCTTGAGCTGCTAACTGGGAGGAAAGCTGTTGACAACGAATCAAACCTCCATCATCTGATTTTGTCCAAGACAGCTAATGATGCCGTAATGGAAACTGTTGATCCCGATATTACTGCCACATGCAAGGACATGGGAGCAGTAAAAAAAGTTTTTCAGCTTGCTCTTTTATGCACAAAGAAGCAACCAGTTGATAGGCCTACAATGCATGAGGTGACTCGCGTGTTGGGAAGCCTTGTGCCATTCATCACTCCACCAAAACAAACTGACCCAACACAAGTAGTAGTACCTGATTCACAGCCATCTGCCAAAATGCAATGCTACAAGGATGAATATGCAAATCTTAAAACTCCTCACTTGGTGAATTGTCCATCCATGAGCACCTCTGATGCCCAACTCTTCCTCAAATTTGGAGAAGTAATATCTCAAAACAGTCACTGA 2955 0.4064 MAFRFGLLFVVFLLCLDSTSSVNSHDGETLMEIKKSFKDVDNVLYDWTDSPSSDYCVWRGVACDNVTFNVVALNLSGLNLEGEISPAIGRLNSLVSIDFQENRLSGQIPDELGDCSSLKSIDLSFNEIRGDIPFSVSKMKRLENLILKNNQLIGPIPSTLSQIPNLKILDLAQNNLSGEIPRLIYWNEVLQYLGLRDNNLVGSLSPDMCHLTGLWYFDVRNNSLTGSIPENIGNCTTFQVLDLSYNKLTGEIPFNIGFLQVATLSLQGNKLSGHIPSVIGLMQALTVLDLSCNMLSGPIPPILGNLTYTEKLYLHGNQLTGLIPPELGNMTKLHYLELNDNHLSGHIPPELGKLTDLFDLNVANNNLEGPIPDNLSSCKNLNSLNVHGNKLSGTVPSAFHSLESMTYLNLSSNNLQGSIPIELSRIGNLDTLDISNNNIIGSIPSSIGDLEHLLKLNLSRNHLTGFIPAEFGNLRSVMDIDLSNNQLSGLIPEELSQLQNMISLRLEKNKLSGDVSSLVNCLSLSLLNVSYNNLVGVIPTSKNFSRFFSDSFIGNPGLCGEWLDSSCHGSHPTERVTLSKAAILGIAIGALVILFMILLAACRPHNPASFSDGSFDKSVNYSPPKLVILHMNMALHVYDDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKKLYSHYPQYLKEFETELETVGSIKHRNLVSLQGYSLSPYGNLLFYDYMENGSLWDLLHGPTKKKKLDWDLRLKIALGSAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEPHLTDFGIAKSLCPSKTHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNESNLHHLILSKTANDAVMETVDPDITATCKDMGAVKKVFQLALLCTKKQPVDRPTMHEVTRVLGSLVPFITPPKQTDPTQVVVPDSQPSAKMQCYKDEYANLKTPHLVNCPSMSTSDAQLFLKFGEVISQNSH 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00208 984 Gene3D Ribonuclease Inhibitor 23 188 IPR032675 -
Pumo10g00208 984 Gene3D Ribonuclease Inhibitor 189 297 IPR032675 -
Pumo10g00208 984 Pfam Protein kinase domain 651 911 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g00208 984 SMART serkin_6 648 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g00208 984 SUPERFAMILY Protein kinase-like (PK-like) 625 914 IPR011009 -
Pumo10g00208 984 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 724 925 - -
Pumo10g00208 984 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 619 723 - -
Pumo10g00208 984 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 298 570 - -
Pumo10g00208 984 ProSiteProfiles Protein kinase domain profile. 648 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g00208 984 ProSitePatterns Serine/Threonine protein kinases active-site signature. 769 781 IPR008271 GO:0004672|GO:0006468
Pumo10g00208 984 SUPERFAMILY L domain-like 50 301 - -
Pumo10g00208 984 Gene3D Ribonuclease Inhibitor 298 570 IPR032675 -
Pumo10g00208 984 Gene3D Transferase(Phosphotransferase) domain 1 724 921 - -
Pumo10g00208 984 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 188 297 - -
Pumo10g00208 984 ProSiteProfiles Leucine-rich repeat profile. 165 187 IPR001611 GO:0005515
Pumo10g00208 984 SMART LRR_typ_2 91 115 IPR003591 -
Pumo10g00208 984 SMART LRR_typ_2 402 426 IPR003591 -
Pumo10g00208 984 SMART LRR_typ_2 211 235 IPR003591 -
Pumo10g00208 984 SMART LRR_typ_2 282 306 IPR003591 -
Pumo10g00208 984 SMART LRR_typ_2 163 187 IPR003591 -
Pumo10g00208 984 SMART LRR_typ_2 450 473 IPR003591 -
Pumo10g00208 984 SMART LRR_typ_2 474 497 IPR003591 -
Pumo10g00208 984 SMART LRR_typ_2 330 354 IPR003591 -
Pumo10g00208 984 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 23 187 - -
Pumo10g00208 984 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 162 915 - -
Pumo10g00208 984 Pfam Leucine rich repeat 380 439 IPR001611 GO:0005515
Pumo10g00208 984 Pfam Leucine rich repeat 452 511 IPR001611 GO:0005515
Pumo10g00208 984 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Pumo10g00208 984 Gene3D Phosphorylase Kinase; domain 1 617 723 - -
Pumo10g00208 984 ProSitePatterns Protein kinases ATP-binding region signature. 654 677 IPR017441 GO:0005524
Pumo10g00208 984 SUPERFAMILY L domain-like 261 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00208 Pumo-Chr10 2899034 2906761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00208 93 983 Receptor kinase-like Gene Family AT5G07180 63.901 0.0 1132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Pumo10g00208 Pkinase 1.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00208 K20718 - gmx:100804875 1828.53