Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00199 ATGAACCCCAGAAGGTATCAGATAGAGGTGTTTGAAGTTGCAAGGAGAAGGAACACAATAGCTGTGTTGGATACAGGGTCTGGTAAGACATTGATTGCTGTAATGCTTATGAAAGAGGTTGGTCAAACGATCAAGACTAGTGGTGTAAAGAAGCTGATTCTTTTCTTGGCTCCCACAGTTCATCTTGTCAATCAGCAATTCAAGAATATAAAATATCTGACTGATTTTCAAGTTGAGGAATACTATGGGGCTAAAGGAGTTGATACATGGACTTTGAAGACGTGGGAGAAGGAGATTAGTAACAATGATGTTCTGGTTATGACACCCCAGATTCTTTTGGATGCCTTAAGAAAAGCATTCCTGCGTATGGAAATGATATGCTTGATTGTTATTGATGAATGTCATAGAGCAACTGGCAACCATCCCTATACAAAAATAATGAAGGAATTTTATCACCAAGCTAATGAAAAGCCAAAGATTTTTGGGATGACAGCATCACCAGTTGGTAAAAAAGGTGTTTCCTCTACTATGGATTGTGAGGATCAGATATCAGAACTTGAAAGCATCTTGGATTCTCAGAGATATACTGTTGAAGATCGGACAGAGATGGATAGATGTATCCCATCTGCTAAAGAGAGTTGTAGATATTATGATCCAGCACGATTTTCTGCTTTGAGTTTGAAACCAAAGATTGAAGCCTTGTGGTTCAAGTTTGATGCTTTGTTATCAGAAAATCAAAGTAATTATAAGGATGTGGACAATAAATTTAAGACACTGTCTCAGCGGATGTCCAATGAACTTGCAAAAATTTTACATTGCCTTGAAGATCTTGGGATCCTATGTGCTTATGAGGCTGTTAAAATCTGTCATGAGAATTTCTCCAAATCTGAAGGAGAGTGTGAAATTTACAGAAAAGGTTATCTTCAGTGTATAACTTTTGTTGAAGAAATAATCAAATTAATCGAAGAATCCCTCCATCTTGCTGATAAGAAGATTTTGGAGGTCGATTTTGATTATTCGCAGGCAGAAGATTTGGGATACATATCTCCAAAATTAGTTGAACTTATTAAACTCTTTCAGTCATTTGGAGAATCTAGTCAGGTGTTGTGCCTTATTTTTGTTGATAGAATCATTACAGCCAAGGTGATTGAAAGATTCGCAAAGACAGTTCCCCATATTTCTCATTTCACAGTTTCCTATTTAACTGGAAACAATACATCGGTTGATGCTCTGGCTCCTAAGAGGCAGAAGGAGATATTGGATTCTTTCCGCTCTGGAAAGGTCAATCTATTATTTACTACTGATGTACTTGAGGAAGGAATTCATGTGCCAAACTGCTCATGTGTGATACGTTTTGACCTCCCAAAGACAGTTCGTAGTTATGTCCAATCTCGTGGAAGATCTAGGCAGGCAAACTCCCAATTTGTTGTGATGCTGGAGAGGGGAAACTTGCAGCAAAGAAATCAACTCTTTGACATCATTAGGAGTGAGCGCTCCATGACTGATGCATCTATTTATAAAGACCATGAATCTAGTTTAAGGGCATGTACGGTGGGGAAAACAAATGCATACTATGTGGAATCTACTGGAGCATCTGTCACTTTAGATTCTAGTGTTAATCTTATCCACCGATACTGTGGAACACTCCCACGAGATAAGTACTCCTGTGTAAAGCCCAGTTTTGAGTTTCTACCTGTGGAAGGGGGTTACCAGTGTAAATTAATATTACCATCTAATTCAGCTTTCCAAACAATAATTGGTTCTTTTGGAAAAGATACTCGTTTGGCAAAGCATCTTGCATGTTTTGAAGCTTGTAAAAAGCTGCATCAAATGGGCGCCTTAAATGAACATTTGGTTCCATTCATTGAAGATTCTTCAGAAGATGACCATATTGTGAAAAATAAAGAATCAAGTTCTGGTGCAGGGACCACAAAAAGAAAGGAGTTACATGGAACAGCTAACATTCGTGCATTAAGTGGTGCATGGGGAGAAAATCTCGATGGAGCCAAATTTCATGCCTATAAATTTGAATTCACATGTAATATTGTTAGTGAAATATACTCTGGGTTTGTTTTTTTGATTGAGTCAAAGCTTGATGATGATGTGGGGAATATAGAATTAGATCTTTATTTAGTCTCAAAGATCGTGAAAGCTTCCATCTCTTTGTGTGGACAAATTGATTTGGATGCTGAACAGATGATGAAAGCAAAATGCTTCCATGAGCTTTTTTTCAATGGTTTATTTGGGAGATTGGTCTTTAAGTCCAAATCAGCAGGAGGAGAAAAAGAATTTTTACTTCAGAAAGACACAAAATCATTGTGGAGCCCGAAACACCTGTATTTGCTTCTACCACTTGAGAAATTGAATGATATCTGTGAGGGATCTTTGCAAATTAATTGGTGTGGAATCAATTCTTGTGCTTCTGCTATTGAATTTTTAAGGAGGAAAATTTCTTTGGTCACTGGAGATTGTGATGATAACGGCACAATCACATCACCTCATGATACCAGTTCATCAGAGATAGAATGTGAAGGAACAAACAAGATTCACTTTGCTAATTGTGTGGTTGATGCTGATAATATAAAAGATATGGTAGTTTTGGCCATTCACACTGGGAAAATATATTGTATTATTGAGATCGACAGTAACCTAACTGCTGAAAGTCCTTTCTATGGAAACAATGAAAAATCAAAGGAATGCGTTACCTTTTCGGATTATTTCAGCAAAAGGTATGGGATTAAACTGAGACATCCAGGACAGCTTCTGTTACGATTGAAGCAAAGTCATAATCCACACAATCTTCTTTTCAACTTCCATGAGGAAGATGCACGAGACAAGTCATCACAAATTGGCCCTGCAGCCTCAAAAATGCCAGCGCATGTTCACATTCCACCTGAGCTTCTATACATTCTTGATGTTAAAAGAGATGTGTTGAAGTCACTGTACTTGCTGCCATCTCTGATGTACCGCATTGAATCTTTGATGTTATCTAGTCAGCTTAGAGAAGAGATAGATGGTCAAACTAGCAAGTTTAACATACGTAGCTCACTGATTCTAGAAGCACTTACAACTTTGAGATGTAGTGAAAGTTTTTCAATGGAACGTCTTGAGTTGCTAGGAGATTCTGTTTTGAAGTATGTGGTGAGCTGTCACCTCTTTCTTAAATATCCTAAGAAACACGAAGGACAATTATCTGCCAGACGATCATCGGCTGTTTGTAATTCAACCCTACATAAACTGGGGACAGATCGCAAATTACAGGGATATATTCGAGACTCTGCATTTGAACCACGCCGTTGGGTTGCTCCAGGACAGCATTCTTTACACCCTGTTTGTTGTGATTGTGGGTTGGAAACCCTTGAAGTGCCTTTAGATGTAAAATTCCATACTGAAGATCCAAAAGTTGTGGTTGGGAAGTTTTGTGACAGGGGTCACCGCTGGATGTGTTCTAAGACTATTGCTGACTGTGTTGAAGCTCTGATAGGAGCATACTATGTGGATGGTGGACTCTTTGCTTCACTTAATGTGATGAAATGGCTTGGGATTGGTGCTGAACTTGAACTATCCTTGGTTGATGAAGCAATCATTGCTGCATCTCTGCGTACATGTGTGCCAAAAGAAAGTGAGATTGCAAGCCTTGAAAAGAAAATTGGGTATGAATTTTCGGTCAAGGGACTCTTACTGGAGGCAATCACACATTTGTCTGAGAAAGAACTTGAGATTGGCTGCTGTTATGAGAGGCTTGAATTTCTTGGTGACTCAGTATTGGACCTGCTTATCACATGGCATCTTTATCAGAGTCACACAGATATTGATCCAGGGGTGTTGACTGACTTACGTTCTGCTTCTGTCAATAATGACAATTTTGCTCAAGTTGCTGTTAGACATAACCTTCACCAGCACCTTCTACATAGCTCAGGAGTATTACTGAGCCAGATATCAGAATATGTGAAGGTCATTTCTGAATCAGATTCCAGATCACTTCCAAGCATTAGAGCTCCCAAGGCACTTGGAGATGTAGTGGAAAGTATTGCCGGGGCTATACTAATTGATACCAAGCTCAGTCTTGACCAAGTGTGGAACGTTTTCTATCCTCTATTATCTCCCATTGTTACTCCTGATAAACTTGAATTGCCTCCATTTCGTGAATTAAATGAATTATGTGATTCACTCGGGTATTTTGTAAAAGTAAAAGAAACTTGTGAAAAAAATGGATCCGCAATGCATGTTGAGGTTAGTGTACAGTTGCCAAATGCCCTATTGGTTCGTGAAGGAAAGGGGGCAAATAAAAAAGCTGCAAAAGGAGAAGCTGCTTTTCATTTGTTGAAGGATCTTGAGAAGCGGGGAATTTCACATGGTAGTTTCATGTCCAAGGGAAAAAGAGATAATCCTGACCATATCTACGATTCATCTCATCTCAAAATGGATTCTAGTATTTGTTCTTCTCTAATTGAAGAACATTCCTCAGAGCCAGCATCACATAAAAAGCACAGATTGGATGAAACTAACTTAACTGCAAGTAAGTTGCCTCCCAAAGACTCTTCCAGTGACATCTTTGGTTTTAGTGCTTTCATTTCCAGGTTTGCACCATTGATTTTTGTTCCGTGTTTGATTGCAAGTTTTGTCTTCCCAGTTACAGTGTCCACTTCTGGGAAATTTTCTCCCTTTGCTTCTTTGTATGGCTTGTTAAGTGTTTAG 4698 0.3876 MNPRRYQIEVFEVARRRNTIAVLDTGSGKTLIAVMLMKEVGQTIKTSGVKKLILFLAPTVHLVNQQFKNIKYLTDFQVEEYYGAKGVDTWTLKTWEKEISNNDVLVMTPQILLDALRKAFLRMEMICLIVIDECHRATGNHPYTKIMKEFYHQANEKPKIFGMTASPVGKKGVSSTMDCEDQISELESILDSQRYTVEDRTEMDRCIPSAKESCRYYDPARFSALSLKPKIEALWFKFDALLSENQSNYKDVDNKFKTLSQRMSNELAKILHCLEDLGILCAYEAVKICHENFSKSEGECEIYRKGYLQCITFVEEIIKLIEESLHLADKKILEVDFDYSQAEDLGYISPKLVELIKLFQSFGESSQVLCLIFVDRIITAKVIERFAKTVPHISHFTVSYLTGNNTSVDALAPKRQKEILDSFRSGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRSRQANSQFVVMLERGNLQQRNQLFDIIRSERSMTDASIYKDHESSLRACTVGKTNAYYVESTGASVTLDSSVNLIHRYCGTLPRDKYSCVKPSFEFLPVEGGYQCKLILPSNSAFQTIIGSFGKDTRLAKHLACFEACKKLHQMGALNEHLVPFIEDSSEDDHIVKNKESSSGAGTTKRKELHGTANIRALSGAWGENLDGAKFHAYKFEFTCNIVSEIYSGFVFLIESKLDDDVGNIELDLYLVSKIVKASISLCGQIDLDAEQMMKAKCFHELFFNGLFGRLVFKSKSAGGEKEFLLQKDTKSLWSPKHLYLLLPLEKLNDICEGSLQINWCGINSCASAIEFLRRKISLVTGDCDDNGTITSPHDTSSSEIECEGTNKIHFANCVVDADNIKDMVVLAIHTGKIYCIIEIDSNLTAESPFYGNNEKSKECVTFSDYFSKRYGIKLRHPGQLLLRLKQSHNPHNLLFNFHEEDARDKSSQIGPAASKMPAHVHIPPELLYILDVKRDVLKSLYLLPSLMYRIESLMLSSQLREEIDGQTSKFNIRSSLILEALTTLRCSESFSMERLELLGDSVLKYVVSCHLFLKYPKKHEGQLSARRSSAVCNSTLHKLGTDRKLQGYIRDSAFEPRRWVAPGQHSLHPVCCDCGLETLEVPLDVKFHTEDPKVVVGKFCDRGHRWMCSKTIADCVEALIGAYYVDGGLFASLNVMKWLGIGAELELSLVDEAIIAASLRTCVPKESEIASLEKKIGYEFSVKGLLLEAITHLSEKELEIGCCYERLEFLGDSVLDLLITWHLYQSHTDIDPGVLTDLRSASVNNDNFAQVAVRHNLHQHLLHSSGVLLSQISEYVKVISESDSRSLPSIRAPKALGDVVESIAGAILIDTKLSLDQVWNVFYPLLSPIVTPDKLELPPFRELNELCDSLGYFVKVKETCEKNGSAMHVEVSVQLPNALLVREGKGANKKAAKGEAAFHLLKDLEKRGISHGSFMSKGKRDNPDHIYDSSHLKMDSSICSSLIEEHSSEPASHKKHRLDETNLTASKLPPKDSSSDIFGFSAFISRFAPLIFVPCLIASFVFPVTVSTSGKFSPFASLYGLLSV 1565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00199 1565 PANTHER DICER-RELATED 17 1452 - -
Pumo10g00199 1565 MobiDBLite consensus disorder prediction 1489 1503 - -
Pumo10g00199 1565 CDD RIBOc 1226 1374 IPR000999 GO:0004525|GO:0006396
Pumo10g00199 1565 MobiDBLite consensus disorder prediction 1489 1508 - -
Pumo10g00199 1565 FunFam Dicer-like 104 992 1181 - -
Pumo10g00199 1565 SUPERFAMILY RNase III domain-like 1010 1187 IPR036389 GO:0004525|GO:0006396
Pumo10g00199 1565 Gene3D paz domain 844 970 - -
Pumo10g00199 1565 Gene3D - 1 233 IPR027417 -
Pumo10g00199 1565 FunFam Endoribonuclease dicer-like 1 1204 1374 - -
Pumo10g00199 1565 Pfam Helicase conserved C-terminal domain 364 468 IPR001650 -
Pumo10g00199 1565 Gene3D - 342 505 IPR027417 -
Pumo10g00199 1565 FunFam Endoribonuclease dicer-like 1 342 505 - -
Pumo10g00199 1565 Gene3D Ribonuclease III domain 1201 1373 IPR036389 GO:0004525|GO:0006396
Pumo10g00199 1565 Gene3D Ribonuclease III domain 998 1180 IPR036389 GO:0004525|GO:0006396
Pumo10g00199 1565 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 351 514 IPR001650 -
Pumo10g00199 1565 ProSiteProfiles Ribonuclease III family domain profile. 997 1169 IPR000999 GO:0004525|GO:0006396
Pumo10g00199 1565 ProSiteProfiles Ribonuclease III family domain profile. 1210 1353 IPR000999 GO:0004525|GO:0006396
Pumo10g00199 1565 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 10 185 IPR014001 -
Pumo10g00199 1565 SUPERFAMILY PAZ domain 858 972 IPR036085 GO:0005515
Pumo10g00199 1565 FunFam Endoribonuclease dicer-like 1 533 629 - -
Pumo10g00199 1565 Pfam Ribonuclease III domain 1246 1352 IPR000999 GO:0004525|GO:0006396
Pumo10g00199 1565 Pfam Ribonuclease III domain 1034 1169 IPR000999 GO:0004525|GO:0006396
Pumo10g00199 1565 SUPERFAMILY RNase III domain-like 1209 1373 IPR036389 GO:0004525|GO:0006396
Pumo10g00199 1565 Gene3D - 1379 1448 - -
Pumo10g00199 1565 SMART helicmild6 384 471 IPR001650 -
Pumo10g00199 1565 CDD DEXHc_dicer 1 199 - -
Pumo10g00199 1565 SMART PAZ_2_a_3 836 996 IPR003100 GO:0005515
Pumo10g00199 1565 CDD SF2_C_dicer 347 479 - -
Pumo10g00199 1565 FunFam Dicer-like 104 849 969 - -
Pumo10g00199 1565 Gene3D Dicer dimerisation domain 533 631 IPR038248 -
Pumo10g00199 1565 CDD RIBOc 1016 1180 IPR000999 GO:0004525|GO:0006396
Pumo10g00199 1565 ProSiteProfiles PAZ domain profile. 858 972 IPR003100 GO:0005515
Pumo10g00199 1565 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1424 1447 IPR014720 -
Pumo10g00199 1565 SMART riboneu5 1016 1189 IPR000999 GO:0004525|GO:0006396
Pumo10g00199 1565 SMART riboneu5 1225 1376 IPR000999 GO:0004525|GO:0006396
Pumo10g00199 1565 Pfam Dicer dimerisation domain 538 623 - -
Pumo10g00199 1565 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 479 IPR027417 -
Pumo10g00199 1565 Pfam PAZ domain 857 993 IPR003100 GO:0005515
Pumo10g00199 1565 FunFam Endoribonuclease dicer-like protein 1 236 - -
Pumo10g00199 1565 ProSitePatterns Ribonuclease III family signature. 1246 1254 IPR000999 GO:0004525|GO:0006396
Pumo10g00199 1565 Pfam Type III restriction enzyme, res subunit 9 167 IPR006935 GO:0003677|GO:0005524|GO:0016787
Pumo10g00199 1565 SMART ultradead3 2 198 IPR014001 -
Pumo10g00199 1565 SUPERFAMILY dsRNA-binding domain-like 1379 1453 - -
Pumo10g00199 1565 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 538 628 IPR005034 GO:0016891
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00199 Pumo-Chr10 2753931 2776257 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00199 395 468 Eukaryotic Initiation Factors Gene Family AT3G19760 39.189 3.40e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00199 K11592 - gmx:100806831 2799.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00199 10 2753931 2776257 Pumo10g00199 10 2753931 2776257 ECH
Pumo4g00588 4 7722936 7732756 Pumo10g00199 10 2753931 2776257 ECH
Pumo2g01814 2 33940457 33954168 Pumo10g00199 10 2753931 2776257 ECH