Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00198 ATGGGTGGTGATGGTAGAGTTGAAGTTGTGAGTGGCAAGGGGTGTTCGAGGCTGTTTTCATCTTCACTTCCTTCATTCAGAGGCTTGCAACCATTGGAGCCAATGTCTCCTGTTTCGTCCCCTTTGCAAGTGCCATCATCAACTGCTCCTTTTGCTGGTCTTGTCATATGCGTTACTGGTTTATCTAAAGAAGCAAGGAATCAGGTCATGGAGGCTACAGAGAGATTAGGTGGGCAGTATAGCCCCAATTTGCATCCTCAATGTACCCATTTGGTGGTTCAGAGTTTTGGTGGACGCAAGTTTGAGCATGCGCTGAAGCATGGAGCAAAAAATGGCCTATTTGTTGTCACACTGGGTTGGTTTGTGGATAGTGTCAGGAAAAATGTGAGGTTGAGTGAATCACATTATAGAGTGAAGAGTTATGGGGATAACAACATGCGCTTGGAGGATTTTAGACTGCTTCCTGAGTATACAAATGCTGAAAATTCTTGTCTTCCTGCAAGAATCCACCAAACCAAGCAAGCTAATAGTGTTGAAGAACTTCAAAGATTCTCTGGGAGAGAGTCTATCAGAAATTCAGACTCAACTTTGTCTGGCTGCTCCATCTATGTTGATCCAGGCATTTCATCTGAAATGCGAAACAAGGTTATTGAGACTGCTTCAAGAGAAGGTGCTAGTTTGGTGGAACAATGGTTTGTTGGCTGCAATGTTAGTCATGTAGTAACTGAAGGGACATCAATCCAAAGATATCTTGGATACTCTAGTAACCTCATTACACCTCTGTGGATTCTCAAAACAGCTAAGGAGAAATATGTGCGAAGGCTTGTTCACATGTCTGTTGATTTGGCAAAGCAAGTTGGCCTGATGCTTGAAGACATTCATAATGGCATTTCAGGAAAGGAAGTAATAAAGCAAAAGGTCCTTGACAATCTTCCGGAGAGTGAAAGTGAAGTCAGCTATGAAGAAAGACAACAAATTGTGAATTCTGCAAAAAATGGAGTCAGAAATCGCCGTGGTCGTCGAATGCAGACTTGTCAGACTCCAATACGTCCTATAACACCCAACAACCTTCTAGACTCTATCTGCTGGTCTATATCCGAGCCAACTTCAACAGCTTCCATTTACACAGACTCTTTCAGTGTTGAAGATCCTAGTGAAAATCATACTTCAATATTTTTCGACGCAAAAGGGGATGGCAAGGATTCAGAAGCTTCATTTTCAAACTCCACTCGTCCTCTGACAGAAAGTGAGAAATCCGAGTTGATATTTAAAAACCATTTCCTTACCATACTCTTCCCAATTGACCGATTCGCCGAGATGGGTCCTTCTTCAAGAACACTTTTCAGCCATAATGGTTTTACGTGTCTTCAGGTGTTGGATCATATCCATGAATTCTATCAGGAGAACATGTCAAGGCAGGAAATAGAAGCTGCAATTCATAGTGATTCAAGACATGCTGATAGGCTTCGATCAGTGTACTCTAGTAAGGAAACAGCAGAACGTGGCTGTGTAATGTTCAAAAGGGTTGAATTCTTGGGTAGTCGTACAAGTTTTGAAATGTTGAAGCGTGTAACTGGGGACAACAACTCCAACGTTTATGAGCTATTACTTAGGGCCTAA 1620 0.4222 MGGDGRVEVVSGKGCSRLFSSSLPSFRGLQPLEPMSPVSSPLQVPSSTAPFAGLVICVTGLSKEARNQVMEATERLGGQYSPNLHPQCTHLVVQSFGGRKFEHALKHGAKNGLFVVTLGWFVDSVRKNVRLSESHYRVKSYGDNNMRLEDFRLLPEYTNAENSCLPARIHQTKQANSVEELQRFSGRESIRNSDSTLSGCSIYVDPGISSEMRNKVIETASREGASLVEQWFVGCNVSHVVTEGTSIQRYLGYSSNLITPLWILKTAKEKYVRRLVHMSVDLAKQVGLMLEDIHNGISGKEVIKQKVLDNLPESESEVSYEERQQIVNSAKNGVRNRRGRRMQTCQTPIRPITPNNLLDSICWSISEPTSTASIYTDSFSVEDPSENHTSIFFDAKGDGKDSEASFSNSTRPLTESEKSELIFKNHFLTILFPIDRFAEMGPSSRTLFSHNGFTCLQVLDHIHEFYQENMSRQEIEAAIHSDSRHADRLRSVYSSKETAERGCVMFKRVEFLGSRTSFEMLKRVTGDNNSNVYELLLRA 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00198 539 Gene3D BRCT domain 49 140 IPR036420 -
Pumo10g00198 539 ProSiteProfiles BRCT domain profile. 46 138 IPR001357 -
Pumo10g00198 539 Pfam Family of unknown function (DUF6699) 362 523 IPR046522 -
Pumo10g00198 539 SMART BRCT_7 48 128 IPR001357 -
Pumo10g00198 539 SMART BRCT_7 194 270 IPR001357 -
Pumo10g00198 539 Pfam twin BRCT domain 54 120 IPR001357 -
Pumo10g00198 539 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 3 539 - -
Pumo10g00198 539 CDD BRCT_TopBP1_rpt2_like 50 128 - -
Pumo10g00198 539 SUPERFAMILY BRCT domain 48 139 IPR036420 -
Pumo10g00198 539 ProSiteProfiles BRCT domain profile. 192 270 IPR001357 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00198 43 138 Core DNA Replication Machinery Family AT1G77320 37.500 1.14e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00198 - - gmx:100815253 1008.05