Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00197 ATGGCGGACGTCATGGTGATGAAAGAGATCGAAGACACGGCGCTGCGTCTCGGCGTCGATCTCTCCACTCTCGATCTCGACGCCATTCGCCTCCCTCCCGGCGAAAATTGCGGCATCGTCAGTGATGACGAGGATGTTTACCAAGAAGATAATCTCGAGTTTGAGTCTGGATTTGGTAACATCATTGTCGTGGATAACCTCCCCGTGGTTCCGAGGGAGAAGTTCGAGAAGCTCGAAGGAGTGGTTCGGAAAATTTATAGCCAGATTGGTGTTATCAAGGAGGATGGCCTCTGGATGCCTGTTGATCCTGAAACTGAGAAAACCTTAGGTTACTGCTTCATTGAGTACAATACCCCTCAGGAAGCTGAGCTTGCCAAAGAGAAGACTCATGGGTACAAATTGGATCGTGCACATATATTCTCTGTTAGCATGTTTGATGACTTCGACAGATTCATGAAGGTGCCTAATGAGTGGGCTCCTCCCGAAACTAAGCCATACACTCCAGGGGAAAATCTTCAACACTGGCTCACTGATGCAAAGGCCAGGGACCAGTTTGTGATTCGTGCTGGTTCTGATACTGAGGTTTTGTGGAATGATGCAAGGCATCTAAAGCCTGATCCCGTTTATAAGCGTGCATTTTGGACTGAGAGTTTCGTGCAATGGTCTCCTTTGGGGACATACTTGGCAACTGTTCACAGACAGGGGGCAGCAGTCTGGGGAGGTGCTACAAGCTTTAATAGACTTATGCGTTATGCGCATCCTCAGGTAAAACTTATTGATTTTTCACCTGGTGAGAAGTATTTGGTAACATATAGCAGCCATGAACCAAGCAATCCCCGAGATGCCAATAGAGTTGTGATAAATATATTTGATGTGAGGACTGGTAAAGTTATGAGGGACTTTAAAGGAAGTGCTGATGATTTTGCAGTTGGAGGTGCTGGGGGTGTCACTGGAGTTTCATGGCCTGTTTTCAAATGGAGTGGTGGAAGAGATGATAAGTACTTTGCAAGGATGGGAAAAAATATACTCTCCATATATGAGACAGAGACCTTTTCTCTCGTTGACAAGAAATCCTTAAAGGTTGAAAATATAATGGATTTCTGCTGGTCTCCAACTGATCCAATTATTGCTCTCTTTGTTCCTGAGATGGGAGGTGGTAACCAGCCTGCCAGGGTTAGTCTGATTCAAATCCCCAGCAAAGAGGAACTCAGGCAGAAGAACCTTTTCAGTGTCAGTGACTGCAAGATGTACTGGCAAAGCAATGGAGACTACCTTGCTGTTAATGTAGAGAGGTACACGAAAACGAAGAAAAGCACATACACAGGCTTTGAGCTTTTCCGTATAAAAGAACGGGATATACCAATTGAAGTTTTGGAGCTTGAGAATAAGAATGATAAGATCATTGCGTTTGCTTGGGAGCCAAAGGGCCACAGGTTTGCAGTTATTCATGGTGATAACCCTAAGCCTGATGTTAGCATTTACTCCATGCGAACTGGTCAGAACAGCCGAGTTTCAAAACTCACTACTCTGAAAGGCAAGCAAGCAAACGCTCTGTTTTGGTCACCTGCTGGTCGCTACATTGTACTAGCTGGGTTGAAAGGCTTCAATGGACAGTTGGAATTTTATAACGTTGATGAACTTGAAACCATGGCTACTGCTGAACATTTTATGGCAACAGATATTGAATGGGATCCTACTGGAAGGTATGTTGCAACTGCTGTGACTTCAGTTCATGAAATGGAGAATGGTTTCAATATATGGTCTTTCAATGGCAAGCATCTATATCGGATTCTGAAGGATCACTTCTTTCAGTTCTTATGGAGACCAAGGCCACCATCTTTCTTGACTCCTGAGAAAGAGGAAGAGATTGCCAAGAACTTGAAGAAGTATAGTAAGAAATATGAGGCAGAAGATCAAGATGTTTCGTTGCTGCTGAGTGAGCAGGAGCGTGAGAAGCGTAGGATGTTGAAGGAAGAGTGGGACAAGTGGGTTAACGAATGGAAGCGGATCCACGAAGAAGAGAGTTTACATAGGCAAAAGCTTAGGGATGGAGAGGCTAGTGATGAAGAGGAGGAATACGAGGCAAAGGACATTGAAGTGGAGGAAGTGATCGATGTAACAGAAGAGGTCCTTCAACTTGAGTATGGTCAAGAGTGA 2157 0.4474 MADVMVMKEIEDTALRLGVDLSTLDLDAIRLPPGENCGIVSDDEDVYQEDNLEFESGFGNIIVVDNLPVVPREKFEKLEGVVRKIYSQIGVIKEDGLWMPVDPETEKTLGYCFIEYNTPQEAELAKEKTHGYKLDRAHIFSVSMFDDFDRFMKVPNEWAPPETKPYTPGENLQHWLTDAKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRAFWTESFVQWSPLGTYLATVHRQGAAVWGGATSFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADDFAVGGAGGVTGVSWPVFKWSGGRDDKYFARMGKNILSIYETETFSLVDKKSLKVENIMDFCWSPTDPIIALFVPEMGGGNQPARVSLIQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVNVERYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPKPDVSIYSMRTGQNSRVSKLTTLKGKQANALFWSPAGRYIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKHLYRILKDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKRRMLKEEWDKWVNEWKRIHEEESLHRQKLRDGEASDEEEEYEAKDIEVEEVIDVTEEVLQLEYGQE 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00197 718 FunFam Eukaryotic translation initiation factor 3 subunit B 411 625 - -
Pumo10g00197 718 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 136 IPR000504 GO:0003723
Pumo10g00197 718 MobiDBLite consensus disorder prediction 675 695 - -
Pumo10g00197 718 SUPERFAMILY RNA-binding domain, RBD 57 143 IPR035979 GO:0003676
Pumo10g00197 718 CDD RRM_eIF3B 59 143 IPR034363 -
Pumo10g00197 718 SUPERFAMILY DPP6 N-terminal domain-like 218 598 - -
Pumo10g00197 718 FunFam Eukaryotic translation initiation factor 3 subunit B 181 382 - -
Pumo10g00197 718 PIRSF Transl_init_eIF3b 8 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Pumo10g00197 718 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Pumo10g00197 718 Pfam Eukaryotic translation initiation factor eIF2A 406 605 IPR013979 -
Pumo10g00197 718 SMART rrm1_1 61 143 IPR000504 GO:0003723
Pumo10g00197 718 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 712 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Pumo10g00197 718 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 37 711 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Pumo10g00197 718 Gene3D - 59 143 IPR012677 -
Pumo10g00197 718 Gene3D - 189 383 IPR015943 GO:0005515
Pumo10g00197 718 Gene3D - 416 618 IPR015943 GO:0005515
Pumo10g00197 718 FunFam Eukaryotic translation initiation factor 3 subunit B 55 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00197 Pumo-Chr10 2730123 2734572 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00197 5 712 Eukaryotic Initiation Factors Gene Family AT5G27640 77.183 0.0 1184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00197 K03253 - gmx:100779711 1418.68