Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00192 ATGGACATGGAGAACAATAAGCATGCCATGGCTGCAGGTGCTAGTGATTCTAACACTGATCACACCACCCCAATATCTTCTTCTTCTTGTGTTAATGATAATAACAACAAGAAGTTATACAAAGGGGTGAGAAAGCGAAAGTGGGGGAAATGGGTTTCTGAAATCAGACTACCCAATAGCCGTGAACGCATATGGCTAGGGTCTTATGACTCTCCTGAAAAAGCAGCACGAGCCTTCGATGCTGCCCTTTACTGTCTACGTGGTCGCCATGCCAACTTCAATTTCCCCAACACACCTTGCAACATGGACACCAATGTGGCTGTGCCTGCTGACCAATCTCTTACCCCACAAGAGATTCAAGAGGTTGCTGCTAAGTTTGCAAACGAGGATCCACTACTACTAAAACCTCTTGATGATCATCATGTTAATCAAGAAACACAACATGGTGGTGGTGGTGGTAATTCTTCATCATTTGGATCAAAGTTGTTATGTAAATCAGACAGCATACAAGAGAGTAGTACTAGTACTACTACTTGTACCCCCACCACCACTGCCTCGTCATGTTCTACTACTATGTATGAATGTGATGGATCGGTGCAAGTGGACCATGGGGACATGGATTGGACATTCTTGAACGTGTTTGATTACTCCAACGAGTTGTTTCCTGTTGTTGGATCCGACTATGATCTCTATTCTGAGCTACACAAGATGCACTCAAGTTCAGGTGAGTTATTGTATTCCACTCCACCCCCACCTCCTTTTGAGGGTTACGAAGAATTAATTCAAGCTGATGATGATGATCCTTTTTCTCACCAATCATTCCTTTGGAATTGGAACTTTTGA 843 0.4342 MDMENNKHAMAAGASDSNTDHTTPISSSSCVNDNNNKKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALYCLRGRHANFNFPNTPCNMDTNVAVPADQSLTPQEIQEVAAKFANEDPLLLKPLDDHHVNQETQHGGGGGNSSSFGSKLLCKSDSIQESSTSTTTCTPTTTASSCSTTMYECDGSVQVDHGDMDWTFLNVFDYSNELFPVVGSDYDLYSELHKMHSSSGELLYSTPPPPPFEGYEELIQADDDDPFSHQSFLWNWNF 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00192 280 MobiDBLite consensus disorder prediction 11 31 - -
Pumo10g00192 280 Pfam AP2 domain 40 88 IPR001471 GO:0003700|GO:0006355
Pumo10g00192 280 MobiDBLite consensus disorder prediction 1 31 - -
Pumo10g00192 280 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Pumo10g00192 280 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Pumo10g00192 280 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Pumo10g00192 280 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Pumo10g00192 280 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Pumo10g00192 280 FunFam Ethylene-responsive transcription factor 2 38 97 - -
Pumo10g00192 280 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Pumo10g00192 280 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 16 175 - -
Pumo10g00192 280 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00192 Pumo-Chr10 2693188 2694748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00192 40 128 AP2-EREBP Transcription Factor Family AT1G74930 74.157 5.25e-42 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo10g00192 AP2 6.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00192 - - gmx:100808434 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00192 10 2693188 2694748 Pumo10g00192 10 2693188 2694748 ECH