Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00185 ATGGAGAATGATAGTATAGAGGACATGGACATTGAGGCCGTTCCTTCAATGTGGCCTGAAGATATTGGAACCGAGGTTGGAAAGCAATTTAATATAGAAAAGCCTGGAAGGGATCAAGACATGTTAGAGGAGGTTACAATCATAGAGGAGCCAACTATAGTTGATTTCAAGCGTCTCATGGAGCTTACAAATTTTACAGAAAAGGGGTCTTCTCAGATGGCATACCTAATGAAACAATGGGAGTACAAGCAGGCCAATGTTGCGCGTCTTCTCAGAGAAGAACTTGACAACCTAAGCAAACAAAGGCAGGATGTTGAGCTCAGGAAGTTGGAGATATTGGAAGAGCATCGATTCGAGGAAGAACGATATGGGGGTGATAAACGCCCGGTTTCTATATTGGATGATGTTTATGATGGTATGTGGCAAGATATACCTTGCAGGAAAAGTGATGTTGTGGTTCAAAACAAGAGGAGTGAGATTGATGCTGAGTTTGACACTGTCATGTACTGGAAACAGCGAGCCCTGCATTCAGAGAAGCAGCTGGAGGCAAGTATCCAAAGAGAACAGATACTTGAAGAAAAATTGCAAGAAAGTATAGCAAACATTGAAAGGCAGTCCTCACCTGTGGAAGAACTCTCGCAGATCCTGAAGAGGGCAGATAATTTCTTGCATTTTATACTCCAAAATGCACCTGTTGTTATTGGCCATCAGGACAAAGAGTTGCGCTATTGCTTTATCTATAATCATTTTCCAAGTTTACAAGAGGAGGACATCATAGGAAAAACCGATGTTGAAATATTCACGGGAGCCGGTGTTAAGGAAGCTCAAGAGTTTAAGAAAGAAGTTTTGGAAAAAGGATTACCTGCAAAAAGGGAAATCACTTTTGAGACAGAACTATTTGGGTCAAAGACATTTTTGATATATGTAGAACCTGTATTTAGCAAAGCAGGGGAGACAATTGGAATAAATTACATGGGAATGGATATAACAGATCAGGTGAGAAAAAGAGAAAGGATGGCAAAGATCCGGGAAGAGATTGCTGTTCAGAAAGCCAAGGAAACAGAACTGAATAAAACCATTCACATCACAGAGGAAACTATGCGAGCAAAACAAATGCTGGCAACAATGTCTCATGAGATAAGATCTCCATTGTCTGGGGTTGTTAGCATGGCTGAAATTCTTTCTACCACAAAACTCGATTGGGAGCAAAGACAATTCTTGGATGTCATGCTATCTTCTGGAGATTTGGTTCTTCAACTTATAAATGACATACTTGATCTTTCCAAGGTCGAGTCAGGAGTGATGAAATTGGAAGCTACTAAATTCCGGCCAAGAGAGGTAGTCAAGCATGTACTCCAGACCGCTGCGGCTTCATTGCAAAAAATATTAACCTTAGAAGGACATGTAGCGGATGATGTACCTATTGAGGTCGTTGGTGATGTTTTAAGGATGCGGCAAATTCTCACAAATTTAATTAGCAATGCCATCAAGTTCACCCATGAAGGCAAAGTTGGAATAAACCTTTACGTTGTGCCAGAGCCTACTTTTGCAAAAGCAGAAGACATCCAAATGATGACTCCAAACCAATCAACTATTTCAGTGAATGATGTGAAAGAAGAGAAATATCTCTCAACACCTCAAAGTGGCAGTGATCATAATTTTCTTGATGGTTGTCAAAAACATGATGACGCTCCCAGCCAAAACCATGCATTCAATGACGAGTGTAGATCTCCAGTTAAAAGCGAATGCTCAATGAACGGAGACACTGAGGAGCAACCTCATTCAGCTGAAACAACAGTGTGGATACGTTGTGATGTATATGACACAGGCATAGGAATACCAGAAGATGCTATACCAACTTTATTTAAAAGGTACATGCAAGTCAGTGCAGACCACGCTCGAAAGTATGGTGGCACAGGGCTAGGACTAGCAATATGCAAACAACTGGTTGAGTTGATGGGGGGTCGTCTAACAGTGTCTAGCAAAGAACACTATGGTTCTACCTTCACTTTCATACTCCCATACAAGGTTTCAATCGCTTGTGATCATTCAGATGATCCGGATGAGCTCTCTGATGTGGACAATAATGATGCTGCGTCTGATGATACAATAGAGAGTTTCTTCCAATTCCAACCACGCACTTTGGGCTCTCTATTCTCTTCTAATGGATCTAGCAGGACACAGATGTTATTACCACACAAAATTGGCTACACAAGCTCACATAAACTTGGTGGATTTTCTGAGAGTTTATATTCATTCCCCTCCTATGATATCATGTCAAAAGGGACATGTTCAGTTGATGATGCATCTTCAGTGGTTGATGTTCCGGAGATGTCTGAATCGGCCAGTTCATCAGGTCACAGCCCAGAAACAAAGTACAAAAGTTTAGTTGGCAGAGATAAAAAGCATCAACATAATGCTCATGCTTGGTCCTTGAATGGTTATGCAAATTCCTCTGAAGCTACTGTAGCAAATGTAGAAATGGATGTAGCAACAAAGTCAAGTGAAACCCAACAAACATGTCAGGGTCAAGGGAAGGCAAACACAACTACCAAATGTGTTACAAGCAGCAGTACATCAGAAGTAACCAAATCCACATTAAAGCCTAAGATCCTTCTTGTTGAAGATAACAAAATTAATGTCATGGTGACTCAGTCCATGATGAAGCAATTAGGCCATAGCATAGATGTTGTGAATAATGGAGTGGAAGCAGTACGTGCAGTTCAGCGCCACAGTTATGACCTGGTTCTGATGGATGTTTGCATGCCAGTTATGAATGGTCTTCAAGCAACAAAACTGATTCGGACTTTTGAGGAAACAGGCAACTGGGATGCTGCAAGAAATGCTGGAATCGAGCAAAGTCTACCAGATCAAGATTATGGATGTTCTGTGCCATCTACAAAACGGATCCCCATTGTCGCGATGACAGCAAATGCTTTGTCAGAGAGTGCTGAAGAGTGTTTTGCAAATGGTATGGACTCGTTTGTGTCAAAACCTGTTACTTTCCAAAAACTGAAAGAGTGTATTGAACAATACTTAAAGTGA 3045 0.4115 MENDSIEDMDIEAVPSMWPEDIGTEVGKQFNIEKPGRDQDMLEEVTIIEEPTIVDFKRLMELTNFTEKGSSQMAYLMKQWEYKQANVARLLREELDNLSKQRQDVELRKLEILEEHRFEEERYGGDKRPVSILDDVYDGMWQDIPCRKSDVVVQNKRSEIDAEFDTVMYWKQRALHSEKQLEASIQREQILEEKLQESIANIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYCFIYNHFPSLQEEDIIGKTDVEIFTGAGVKEAQEFKKEVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMDITDQVRKRERMAKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDWEQRQFLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKILTLEGHVADDVPIEVVGDVLRMRQILTNLISNAIKFTHEGKVGINLYVVPEPTFAKAEDIQMMTPNQSTISVNDVKEEKYLSTPQSGSDHNFLDGCQKHDDAPSQNHAFNDECRSPVKSECSMNGDTEEQPHSAETTVWIRCDVYDTGIGIPEDAIPTLFKRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVSSKEHYGSTFTFILPYKVSIACDHSDDPDELSDVDNNDAASDDTIESFFQFQPRTLGSLFSSNGSSRTQMLLPHKIGYTSSHKLGGFSESLYSFPSYDIMSKGTCSVDDASSVVDVPEMSESASSSGHSPETKYKSLVGRDKKHQHNAHAWSLNGYANSSEATVANVEMDVATKSSETQQTCQGQGKANTTTKCVTSSSTSEVTKSTLKPKILLVEDNKINVMVTQSMMKQLGHSIDVVNNGVEAVRAVQRHSYDLVLMDVCMPVMNGLQATKLIRTFEETGNWDAARNAGIEQSLPDQDYGCSVPSTKRIPIVAMTANALSESAEECFANGMDSFVSKPVTFQKLKECIEQYLK 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00185 1014 Gene3D PAS domain 209 345 - -
Pumo10g00185 1014 FunFam Probable histidine kinase 1 568 680 - -
Pumo10g00185 1014 SMART REC_2 869 1009 IPR001789 GO:0000160
Pumo10g00185 1014 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 463 674 IPR036890 -
Pumo10g00185 1014 FunFam Histidine kinase 5 210 345 - -
Pumo10g00185 1014 CDD HATPase_EvgS-ArcB-TorS-like 484 674 - -
Pumo10g00185 1014 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 6 1013 - -
Pumo10g00185 1014 SUPERFAMILY CheY-like 869 1014 IPR011006 -
Pumo10g00185 1014 ProSiteProfiles Histidine kinase domain profile. 375 677 IPR005467 -
Pumo10g00185 1014 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 479 675 IPR003594 -
Pumo10g00185 1014 FunFam Histidine kinase 5 863 1014 - -
Pumo10g00185 1014 SUPERFAMILY PYP-like sensor domain (PAS domain) 213 330 IPR035965 -
Pumo10g00185 1014 Pfam Response regulator receiver domain 871 938 IPR001789 GO:0000160
Pumo10g00185 1014 PRINTS Bacterial sensor protein C-terminal signature 661 674 IPR004358 GO:0016310|GO:0016772
Pumo10g00185 1014 PRINTS Bacterial sensor protein C-terminal signature 637 655 IPR004358 GO:0016310|GO:0016772
Pumo10g00185 1014 PRINTS Bacterial sensor protein C-terminal signature 602 616 IPR004358 GO:0016310|GO:0016772
Pumo10g00185 1014 Gene3D - 862 1014 - -
Pumo10g00185 1014 SMART HisKA_10 368 433 IPR003661 GO:0000155|GO:0007165
Pumo10g00185 1014 Coils Coil 88 115 - -
Pumo10g00185 1014 SMART HKATPase_4 479 677 IPR003594 -
Pumo10g00185 1014 FunFam Putative histidine kinase 5 356 433 - -
Pumo10g00185 1014 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 367 433 IPR036097 GO:0000155|GO:0007165
Pumo10g00185 1014 Gene3D - 434 680 IPR036890 -
Pumo10g00185 1014 Pfam His Kinase A (phospho-acceptor) domain 370 433 IPR003661 GO:0000155|GO:0007165
Pumo10g00185 1014 CDD HisKA 367 429 IPR003661 GO:0000155|GO:0007165
Pumo10g00185 1014 Gene3D - 356 433 - -
Pumo10g00185 1014 ProSiteProfiles Response regulatory domain profile. 870 1013 IPR001789 GO:0000160
Pumo10g00185 1014 Coils Coil 185 205 - -
Pumo10g00185 1014 CDD REC_hyHK_CKI1_RcsC-like 871 1009 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00185 Pumo-Chr10 2569938 2575034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00185 1 1013 Histidine Kinase Gene Family AT5G10720 57.495 0.0 1110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo10g00185 HATPase_c 3.3e-27 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00185 - - gmx:100819520 1812.35