Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00181 ATGGCTTCCAAGCTCTGCGACTCTTGCAAATCCGCCACTGCTACCTTGTACTGCCGCCCCGACGCCGCCTTCCTCTGCGGCGCGTGCGACTCCAAGGTCCATGCCGCCAACAAGCTCGCGTCGCGCCACCCGCGCGTGGCGCTCTGCGAGGTGTGCGAGCAGGCGCCCGCGCACGTCACCTGCAAGGCCGACGCCGCCGCGCTCTGCCTCGCCTGCGACCGCGACATCCACTCCGCCAACCCCCTCGCCAGCCGCCACGAGCGCATCCCCGTCGCGCCCTTCTTCGAGTCCGTGCACTCCGTCAAGGCCTCCTCGCCGATCAACTTCCTCGACGACCACCGCTTCTTCTCCGATGCCGACGCTGACGTCAGCACCGAGGAGGCCGAGGCCGCCTCCTGGTTGCTCCCTAATCCCAAGACAGATCTAAATTCCTCTCAGTACTTGTTCTCCGAAACTGAACCGGTTCCTTACATAGATCTGGATTACGCCGCCGTGGATCCGAAGGCGGAGCAGAAAAGCTCCGCCACCGCCGACGGCGTCGTTCCGGTGCAGAGCAACTTCGAGCCGTTCGCCTACGGTTTCAAGTACAATTCCACTCTCTCACAGTCACAGTCTCAGATGAGCCAAAGTGTATCGTCATCGTCGGTGGAGGTTGGAGTTGTGCCGGACGGGAACACGATGTCGGAGATATCGAACTGCAGCTACAGCAAGGTGGTTCCGGTGACGGTGACGGCGCAGTTCTCGGCGGCGGATAGGGAGGCTAGAGTGTTGAGGTACAGGGAGAAGAGGAAGAACCGAAAGTTCGAGAAGACGATTCGTTACGCTTCGAGAAAAGCGTATGCGGAAACGAGGCCAAGGATTAAAGGCAGGTTCGCGAAACGCAATGATGCGGACCCTCTGGCTGGATACGGCGTCGTTCCGTCGTGTTGA 930 0.6108 MASKLCDSCKSATATLYCRPDAAFLCGACDSKVHAANKLASRHPRVALCEVCEQAPAHVTCKADAAALCLACDRDIHSANPLASRHERIPVAPFFESVHSVKASSPINFLDDHRFFSDADADVSTEEAEAASWLLPNPKTDLNSSQYLFSETEPVPYIDLDYAAVDPKAEQKSSATADGVVPVQSNFEPFAYGFKYNSTLSQSQSQMSQSVSSSSVEVGVVPDGNTMSEISNCSYSKVVPVTVTAQFSAADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRNDADPLAGYGVVPSC 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00181 309 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 6 297 IPR045281 GO:0009909
Pumo10g00181 309 CDD Bbox1_BBX-like 5 48 - -
Pumo10g00181 309 SMART bboxneu5 1 48 IPR000315 GO:0008270
Pumo10g00181 309 SMART bboxneu5 49 91 IPR000315 GO:0008270
Pumo10g00181 309 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Pumo10g00181 309 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Pumo10g00181 309 ProSiteProfiles CCT domain profile. 252 294 IPR010402 GO:0005515
Pumo10g00181 309 Pfam B-box zinc finger 4 46 IPR000315 GO:0008270
Pumo10g00181 309 Pfam B-box zinc finger 47 91 IPR000315 GO:0008270
Pumo10g00181 309 Pfam CCT motif 252 294 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00181 Pumo-Chr10 2531264 2532659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00181 1 308 C2C2-CO-like Transcription Factor Family AT5G24930 53.191 3.31e-112 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pumo10g00181 zf-B_box 4.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00181 - - gmx:100794431 567.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00181 10 2531264 2532659 Pumo10g00181 10 2531264 2532659 ECH