Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00177 ATGCTTCATCGCTCGGTGATTGCTGCTTGTTTACAAGACTTTGGGTGTTTAATGTATTTACATGTGCAGCTTTGGACTGAAAGTTTTGTACTATGGTCTCCATTGGGATCATACTTGGCCACGGTACATAGGCAAGGAGCAAAGGTTTGGGGAGGTGCCACAACATTCAATCCTATAATGCGTTATGCTCATCCCCAGGCTAAACTTATTGATTTTTCACCTGGTGAGAAGTATTTGGTAACCTACAGTAGCCATGAACCAAATAATCCTCGAGATGCAAATAGGGTTATGATAAATATATTTGATGTGAGAACTGGAAAAATAATGAGAAAATTCAATGGAAGTGCTGATGATTTTGCTACTGGAGGTGCTTCATGGCCCATTTTCAGATGGGGTGGAGGAAAGGGTGACAAATACTTTGCTAGACACGGGAAAAATATTATCTCTGTCTATGATACAGAGACATTTTCTCTCATTGACAAGAAGTCCTTAAAGGTTGAGAGTGTAATGGATTTCAGCTGGTCACCAACTGACCCAATCCTTGCACTTTTTGTTCCTGAATTGGGTGGTGGAAACCAACCTGCTAGGGTGAGTTTGGTTCAGATCCCCAGTAAAGAGGAACTCAGACAGAAGAATCTTTTTAGTGTTAGTGATTGCAAGATGTACTGGCAAAGCAATGGGGAGTACCTTGCTGTTAAGGTTGATCATTATACAAAAAAGAAGAAAAGCACATATACAGGCTTTGAGCTTTTTCGTATAAAAGAGAGAGACATACCCATAGAAGTGTTGGAGCTTGAGAATAAAAATGACAAGATCATTGCATTTGCTTGGGAGCCAAAGGGCCATAGGTTTGCAGTGATTCATGGTGATAATCCAAGGCCTGATGTCAGTTTTTACTCAATGAAAACTGCTCAAAATACTGGCCGAGTATCAAAGCTCACTACTCTCAAGGGCAAGCAGGCAAATTCCCTTTTCTGGTCACCTGCTGGCCACTTCATAGTACTTGCAGGGTTGAAAGGCTTAAATGGACAGCTTGAATTTTATAATGTGGATGAGCTTGAAACTATGGCTATGGCTGAGCATTTTATGGGGACCGATGTTGAATGGGATCCTACTGGAAGATATGTTGCAACTTCGGTGACTTCAGTTCATGAAATGGAAAATGGGTTCAATATATGGTCTTTTCATGGCAAGCTTCTTTACCGGATTCTGAAGGATAATTTCTTTCAGCAGTTCTTGTGGCGGCCAAGGCCACCATCGTCACTAAGTCCTGAGAAAGAGGAGGAGATCAGTAAGAACTTGAAGAAGCATAGCAAGAAGTATGAGGCAGAGGAGCAAGATGTTTCAATGCTGTTAAGCGAGCAGGATAGAGAGAAGAGGAGGATGTTGAAAGAAGAATGGGACAGATGGGTCAATGAATGGAAAAGATTGCATGAAGAAGAGAAGATTAGGAATGGAGAAGATAGTGATGAAGAGGAGGAAATTGAAATTGAACAAGTGGTTCATGTCAGGGAGGAGGTCGTTCCAATGGACTGCGTATGA 1542 0.4163 MLHRSVIAACLQDFGCLMYLHVQLWTESFVLWSPLGSYLATVHRQGAKVWGGATTFNPIMRYAHPQAKLIDFSPGEKYLVTYSSHEPNNPRDANRVMINIFDVRTGKIMRKFNGSADDFATGGASWPIFRWGGGKGDKYFARHGKNIISVYDTETFSLIDKKSLKVESVMDFSWSPTDPILALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGEYLAVKVDHYTKKKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDVSFYSMKTAQNTGRVSKLTTLKGKQANSLFWSPAGHFIVLAGLKGLNGQLEFYNVDELETMAMAEHFMGTDVEWDPTGRYVATSVTSVHEMENGFNIWSFHGKLLYRILKDNFFQQFLWRPRPPSSLSPEKEEEISKNLKKHSKKYEAEEQDVSMLLSEQDREKRRMLKEEWDRWVNEWKRLHEEEKIRNGEDSDEEEEIEIEQVVHVREEVVPMDCV 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00177 513 FunFam Eukaryotic translation initiation factor 3 subunit B 216 432 - -
Pumo10g00177 513 Gene3D - 209 449 IPR015943 GO:0005515
Pumo10g00177 513 SUPERFAMILY DPP6 N-terminal domain-like 30 402 - -
Pumo10g00177 513 Coils Coil 427 454 - -
Pumo10g00177 513 Gene3D - 20 186 IPR015943 GO:0005515
Pumo10g00177 513 Pfam Eukaryotic translation initiation factor eIF2A 211 410 IPR013979 -
Pumo10g00177 513 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 22 509 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Pumo10g00177 513 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 23 508 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00177 Pumo-Chr10 2475053 2477503 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00177 25 508 Eukaryotic Initiation Factors Gene Family AT5G27640 75.649 0.0 789
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00177 K03253 - zju:107419937 836.639