Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00176 ATGGCGGATGTTATTGCGATGAAAGAGATTGAGGCAAGTGCTGCCCTGCTGGGAGTGGATCTTTCAACTGTTGATCTGAATTCTATTTGCCTCCGTCCCGATGACGACTTTGGCATAAATAGTGGTGAGGATAATGTATACGAAGAGGACAATTTGAAATTCGATACTGGATTTGGCAACATCATAGTTGTGGACAATCTCCCCATTGTTCCTCGAGAAAAGTTTGAGAAGCTCGAAGGTGTAATCAGAAAAATCTATAGTCAGATTGGCATTATAAAGGAAGATGGCCTTTGGATGCCGGTTGATCCTGTCACTGACAAAACCTTGGGTTATTGCTTTATTGAGTATAATACTCCTCAGGAAGCTGAGCTTGCTAAAGAGAAGACTGATGGATACAAGTTGGATCGCTCGCATATCTTTTCTGTGAATATGTTTGATGACTTTGACAGGTTCATGAGTGTTCCCGATGAGTGGACTTCCACCTGA 486 0.4239 MADVIAMKEIEASAALLGVDLSTVDLNSICLRPDDDFGINSGEDNVYEEDNLKFDTGFGNIIVVDNLPIVPREKFEKLEGVIRKIYSQIGIIKEDGLWMPVDPVTDKTLGYCFIEYNTPQEAELAKEKTDGYKLDRSHIFSVNMFDDFDRFMSVPDEWTST 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00176 161 SMART rrm1_1 61 143 IPR000504 GO:0003723
Pumo10g00176 161 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Pumo10g00176 161 CDD RRM_eIF3B 59 143 IPR034363 -
Pumo10g00176 161 Gene3D - 55 154 IPR012677 -
Pumo10g00176 161 SUPERFAMILY RNA-binding domain, RBD 53 139 IPR035979 GO:0003676
Pumo10g00176 161 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 38 159 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Pumo10g00176 161 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 137 IPR000504 GO:0003723
Pumo10g00176 161 FunFam Eukaryotic translation initiation factor 3 subunit B 55 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00176 Pumo-Chr10 2471969 2474592 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00176 9 158 Eukaryotic Initiation Factors Gene Family AT5G27640 68.667 1.86e-71 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00176 K03253 - zju:107419937 270.396