Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00144 ATGGCAAAGTGTCACCGGAACAACGTCGGATCCATAGCTCTCGACCACCGCCACTCCGCCAAAAATGCCACCGCCGGCGGCCACTTCCGCCTGCTCCGCCGCTTGATCTTCGACGCCGTCAGCTGCGGCAGCACCTCTCGGTACCGGTATCGCCAGCGCGGCGGCGCCGACAACGACGACGGCGACTTAAGCTCGACGGCGAGCCACGTGGAGAAGGATGAGAGGTCGGAGAAGCTATCGGATCTGCTGAATGCAGCGGAGAACAAAACGGCGGCGGAGGAGAAGAAGAAGAAGGAAGAGGCATTGACGGAGCTGAAGCAAGTGGTGAAGGAGCTGCGTGAAGAAGACTTCACAAAGCGGCAAATTGCCGCAGCGAGAGTGAGGTCACTCGCGAAGGAAGATTCGGAAGCGAGAGCGAATCTCGCAATGCTCGGAGCAATTCCTCCTCTCGTCGGAATGCTCGATTCGGAAGACGCACATTCTCAAATCGCTTCGCTCTACGCTTTGCTCAATCTCGGAATCGGCAACGATGCAAATAAAGCGGCTATAGTGAAAATTGGCGCGGTGCACAAGATGCTGAAGCTCATTGAATCGAGTGGTTCAGATTCGTCGGTGTCTGAAGCGATTGTTGCGAATTTCCTTGGATTAAGCGCTTTGGATTCGAATAAACCGATAATTGGATCCTCCGGTGCAATGCAGTTCCTAGTTAGAACCCTACAGAATTTAGATGATAATAAAATCGAGTCCAAATCACAAGTGAAGCAAGATGCTCTGCGCGCTTTGTACAATCTTTCGATCTGTCAGAGCAACGTTTCGGTGGTTTTGGAAACTGAATTGGTTTGGTTTTTAGTGAGCACGATAGGGGACATGGAAGTGAGTGAGAGGAGTCTTGCGATTCTGAGCAATCTGGTGTCGACTCCGGAGGGTAGAAAAGGCATTAGCGGCGTGAGCGATGCGATTCCGATTCTAGTGGACGTGTTGAGTTGGACGGACTCGCCAGAGTGCCAAGAGAAGGCGTCGTACGTTTTGATGGTTATGGCACACAAAGCGTACGGTGACAGGCGGGTGATGATAGAGGCAGGGATAGTGTCGTCGCTGCTTGAGCTGACGCTTGTGGGCACCACGCTGGCTCAGAAGAGGGCCTCCAGAATATTGGAGTGTTTGAGAGTGGACAAAGGGAAACAGGTCTCTGGAAGCAGCTACGGTGGAAACTTGGGTGTCTCTGCTCCTATTTGTGGATCTTCTTCCTCCAAGGGAGGAGGGAAAGGGTGTTTGGTGGAGGAGAATGATGGGATGATGAGTGAGGAAAAAAAAGCAGTGAAGCAGTTAGTGCAACAGAGTTTGCAGAACAATATGATGAAAATTGTCAAAAGGGCCAACTTGCGTCAGGATTTTGTTCCATCTGGGCATCTTGCTTCACTCACTTCAAGTTCCACTTCCAAAAGCCTACCATTTTGA 1458 0.5158 MAKCHRNNVGSIALDHRHSAKNATAGGHFRLLRRLIFDAVSCGSTSRYRYRQRGGADNDDGDLSSTASHVEKDERSEKLSDLLNAAENKTAAEEKKKKEEALTELKQVVKELREEDFTKRQIAAARVRSLAKEDSEARANLAMLGAIPPLVGMLDSEDAHSQIASLYALLNLGIGNDANKAAIVKIGAVHKMLKLIESSGSDSSVSEAIVANFLGLSALDSNKPIIGSSGAMQFLVRTLQNLDDNKIESKSQVKQDALRALYNLSICQSNVSVVLETELVWFLVSTIGDMEVSERSLAILSNLVSTPEGRKGISGVSDAIPILVDVLSWTDSPECQEKASYVLMVMAHKAYGDRRVMIEAGIVSSLLELTLVGTTLAQKRASRILECLRVDKGKQVSGSSYGGNLGVSAPICGSSSSKGGGKGCLVEENDGMMSEEKKAVKQLVQQSLQNNMMKIVKRANLRQDFVPSGHLASLTSSSTSKSLPF 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00144 485 SMART arm_5 306 348 IPR000225 GO:0005515
Pumo10g00144 485 SMART arm_5 267 305 IPR000225 GO:0005515
Pumo10g00144 485 SMART arm_5 134 174 IPR000225 GO:0005515
Pumo10g00144 485 SMART arm_5 176 218 IPR000225 GO:0005515
Pumo10g00144 485 SMART arm_5 219 266 IPR000225 GO:0005515
Pumo10g00144 485 Coils Coil 76 115 - -
Pumo10g00144 485 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 230 279 IPR000225 GO:0005515
Pumo10g00144 485 MobiDBLite consensus disorder prediction 52 81 - -
Pumo10g00144 485 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 29 485 - -
Pumo10g00144 485 Gene3D - 68 248 IPR011989 -
Pumo10g00144 485 MobiDBLite consensus disorder prediction 50 81 - -
Pumo10g00144 485 SUPERFAMILY ARM repeat 104 389 IPR016024 -
Pumo10g00144 485 Gene3D - 249 400 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00144 Pumo-Chr10 2169143 2171272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00144 76 389 U-box Gene Family AT2G23140 32.278 2.88e-32 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00144 - - gmx:100796229 775.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00563 9 9424503 9426756 Pumo10g00144 10 2169143 2171272 PCT