Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00137 ATGACTGTAGAGAAGAAAATGAATGATTCCGGCGACAAGTTTCCCATTGGAATGCGTGTTCTTGCCGTCGATGATGACCCCACTTGCCTCTTGGTTTTGGAAACTCTCCTTCGAAGATGTCAATATCATGTAACCACGACTAATCAAGCAATAAAGGCGTTGGCGCTGTTGAGAGAACACAAAGACAAGTTTGACCTGGTAATCAGTGATGTGCACATGCCAGACATGGATGGATTTAAGCTGCTTGAGCTAGTGGGACTTGAGATGGATCTTCCTGTCATAATGTTATCTGCAAATGGTGATACGAAGCTGGTGATGAAGGGGATTTCTCATGGTGCCTGTGATTATCTGCTGAAACCCGTCAGAATGGAGGAGCTCAAGAACATTTGGCAGCATGTAATCAGGAGGAAGAAGTTTGACTCAAAGGAGAAGAACAAAACCAGCAACCTAGACAAACCTACTTCTAATAGTGGCAATGGACTGGGGTCATCAGGAACAGGAAATTCTGATCAAAATGAGAAGCTGACTAAGAAAAGGAAGGATCAAGATGAAGATGAAGATGAGGAGCAGGAGAACGATCATGACAATGAGGACCCATCAACCCAGAAGAAGCCTCGGGTTGTTTGGTCTGTGGAGCTGCACCGCAAATTTGTTGCTGCCGTTAATCAGCTGGGCATTGACAAGGCTGTACCTAAAAAAATTCTTGATTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCGAGCCATCTCCAGAAGTATAGGCTTTATCTGAAAAGAATTAGCTGCGTGGCTAACCAACAAGCTAATATGGTGGCAGCCTTAGGGGGTGCAGATCCATCCTATTTGAGAATGAGTTCTGTGAGCGGGGTTGGACACTTACAAACATTGAGTGGTTCTGGACAGCTTCATAACAATACTTTCAGATCCTTTCCACCTAGTGGGATAATTAATAGATTGAACACTCCTGCTGGTTTGAATGTGCATGGATTTGCTTCTGGAGTACTTCAATTGAATCAATCACAGAATTTAAACAACGCCAATGATCATCTTAAGTTCCAGTCAGCCATCGTTCCTGTTAATCAGAATGGTGTTCAGGGAATGTCGGTGTCTGTAGGGCTTGATCAATTGCAAAACAATAAGGGTGTTGTGTCTGTTCAAAACCTGACCACTGTTTTTGATGCCAAAACAACTTTTCCCATCTCGAATAAACTCCCAGATCCAAGACCAAAAATAACCACCTCTGGCTCTCGCACTCCAGATCTGGGTATCTCAAACAATTCCTTGATGTTGGAACCACGCCCTCAAGGTACACAAGGGAGTGTAAGATTTGAAACTTTATCGTCTTCAGTAGCCTCTCAACATTCAGATTTTTCTTTGCCTTTGCTGGATCAAGGTAGATATAGTGATAATTGGTCAAGTGCTGTGCAGCCATCTGTGATCCCAACAAACTCATACCCTCCAAGTGAATGTTTTAGACAGAGTAATATACCTCCCACAGATAACATGGCTTCTGTACCCTTGCAAGGTGGGAATCCGAGTGGTGTATCCATCACTTCATTGTCCAGGCAATCCCATGATTCAATGACAGATATGCACTCTGAAGGAGTGACTTTTACTAACAGACCTGGGCATATAAGCAGTAATGTGCCACTTCAAGGGTGGGATAACCATAATCAGGATGCTACTCATCATTCAAATATTATATTTGGATCAATAAACTCACTGACTCCAGTCAATGATGCTGCTGTTCCAGCAGGCCATGCAGCAATAAACACAGCCTTACACAGAAACATGGACTTTAATTTTTGCGATCCCCTACAAATGAAGCATGATGAGTTTGTGGAGTTAACTGAAGAGACCTCATTGAAACATCAGGGAAATATCATGAACCAGCAGAAGTCTCAACAAAGTCATTTCTCTAATAATCTTGGTTCACTGGAAGATTTGGTCAGTTCAATGATGAAACAGGAGAAAGATAAGATGAAATTATTGTATGGAAACCTCATTTGCAATAATTACTCTGGTGGGTTATCTATGTGA 2046 0.4233 MTVEKKMNDSGDKFPIGMRVLAVDDDPTCLLVLETLLRRCQYHVTTTNQAIKALALLREHKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMKGISHGACDYLLKPVRMEELKNIWQHVIRRKKFDSKEKNKTSNLDKPTSNSGNGLGSSGTGNSDQNEKLTKKRKDQDEDEDEEQENDHDNEDPSTQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVAALGGADPSYLRMSSVSGVGHLQTLSGSGQLHNNTFRSFPPSGIINRLNTPAGLNVHGFASGVLQLNQSQNLNNANDHLKFQSAIVPVNQNGVQGMSVSVGLDQLQNNKGVVSVQNLTTVFDAKTTFPISNKLPDPRPKITTSGSRTPDLGISNNSLMLEPRPQGTQGSVRFETLSSSVASQHSDFSLPLLDQGRYSDNWSSAVQPSVIPTNSYPPSECFRQSNIPPTDNMASVPLQGGNPSGVSITSLSRQSHDSMTDMHSEGVTFTNRPGHISSNVPLQGWDNHNQDATHHSNIIFGSINSLTPVNDAAVPAGHAAINTALHRNMDFNFCDPLQMKHDEFVELTEETSLKHQGNIMNQQKSQQSHFSNNLGSLEDLVSSMMKQEKDKMKLLYGNLICNNYSGGLSM 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00137 681 SUPERFAMILY Homeodomain-like 201 261 IPR009057 -
Pumo10g00137 681 MobiDBLite consensus disorder prediction 141 206 - -
Pumo10g00137 681 CDD REC_typeB_ARR-like 20 134 - -
Pumo10g00137 681 Gene3D - 200 263 - -
Pumo10g00137 681 MobiDBLite consensus disorder prediction 405 440 - -
Pumo10g00137 681 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 260 IPR017930 -
Pumo10g00137 681 PIRSF RR_ARR_type-B 1 678 IPR017053 GO:0003677|GO:0003700|GO:0009736
Pumo10g00137 681 Gene3D - 17 153 - -
Pumo10g00137 681 MobiDBLite consensus disorder prediction 150 171 - -
Pumo10g00137 681 SUPERFAMILY CheY-like 17 141 IPR011006 -
Pumo10g00137 681 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 370 IPR045279 GO:0009736
Pumo10g00137 681 SMART REC_2 18 130 IPR001789 GO:0000160
Pumo10g00137 681 MobiDBLite consensus disorder prediction 409 440 - -
Pumo10g00137 681 FunFam Two-component response regulator 200 263 - -
Pumo10g00137 681 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Pumo10g00137 681 Coils Coil 172 192 - -
Pumo10g00137 681 Pfam Myb-like DNA-binding domain 206 256 IPR001005 -
Pumo10g00137 681 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Pumo10g00137 681 NCBIfam myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677
Pumo10g00137 681 FunFam Two-component response regulator 18 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00137 Pumo-Chr10 2076438 2081092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00137 1 381 Response Regulator Gene Family AT2G25180 59.640 6.71e-136 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pumo10g00137 Response_reg 2.9e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00137 - K14491 gmx:100809002 1210.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00137 10 2076438 2081092 Pumo10g00137 10 2076438 2081092 ECH
Pumo9g00584 9 9779923 9785848 Pumo10g00137 10 2076438 2081092 PCT