Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00136 ATGGAAACACTGAGCCACGAGTCTCCCTTCTATGATAACCTCTCCTCCGCTGGAGAGACTCCTCCAAGTCCAAGCACACCATTGCAGAATCCACAGGACAAGAAACAGCTATCTGTTGAAGAAGAAGAAGAGGAAGAAACAACAAAAGCAAATACTTTATTGGATCTAAATACCACTAGTGATGATTCTGCTATTGGGTGCAGTCCAGTGCTGAATCTCATCACTTGTTTGGACACAGATTTGTCTAGCACCTCATCAGAAAACCAACATGGCTCAGAGCCACGAGTCTTCTCTTGCAACTACTGCCGGAGAAAGTTCTACAGTTCACAAGCTCTTGGGGGACACCAAAACGCCCACAAGAGAGAGAGGTCAATTGCAAAGAGAGGTCAGAGATCAGGATCACGCATGATGATGGCCTCAGCAACAGCTTTTGGGATTCCCTTTCTCCATAATCACCTTCCCCACTATGCCACTATGGCTTCTCTGCCTCTCCATGGTGCTTGTCGTAATAAACCACTTGGAATTCAGGCTCACTCCATGATTCACAAACCTTCTTCTTCTTCTTCTTCTCGTTTTTCATTCAATGGGTTTGGAAGCACTTTTGGACATCATGGATGGTCTAGACCCCTTATTGATCAACAACCTGGAATAGGGAAGCTAACGATGGAAAATTGTCACAAAACATCAAGAGGCAGTGTTGGGAAATTCGATGTGGTAAAGACCATGCTTAATTCAGCGACCAATGAAGACATTAGTGGATATATGGTTAGTGGAATTACTCGTTTGAAGACTAATCAAGAGGAAATGAAGCACCTTGACTTGTCCCTAAAGCTCTAA 837 0.4409 METLSHESPFYDNLSSAGETPPSPSTPLQNPQDKKQLSVEEEEEEETTKANTLLDLNTTSDDSAIGCSPVLNLITCLDTDLSSTSSENQHGSEPRVFSCNYCRRKFYSSQALGGHQNAHKRERSIAKRGQRSGSRMMMASATAFGIPFLHNHLPHYATMASLPLHGACRNKPLGIQAHSMIHKPSSSSSSRFSFNGFGSTFGHHGWSRPLIDQQPGIGKLTMENCHKTSRGSVGKFDVVKTMLNSATNEDISGYMVSGITRLKTNQEEMKHLDLSLKL 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00136 278 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 25 278 IPR044246 GO:0009788
Pumo10g00136 278 Gene3D Classic Zinc Finger 76 144 - -
Pumo10g00136 278 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Pumo10g00136 278 MobiDBLite consensus disorder prediction 1 34 - -
Pumo10g00136 278 SUPERFAMILY beta-beta-alpha zinc fingers 94 124 IPR036236 -
Pumo10g00136 278 MobiDBLite consensus disorder prediction 1 55 - -
Pumo10g00136 278 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Pumo10g00136 278 MobiDBLite consensus disorder prediction 113 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00136 Pumo-Chr10 2064176 2065156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00136 23 278 C2H2 Transcription Factor Family AT5G10970 40.221 6.45e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo10g00136 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00586 9 9835941 9837762 Pumo10g00136 10 2064176 2065156 PCT