Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00133 ATGGCCAGATCACAACAGCGATACCGAGGCGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGACACCCCATATTGAAAACTAGGTTATGGCTAGGAACTTTTGAAACTGCTGAGGATGCAGCTAGAGCCTATGATGAAGCAGCAAGGCTAATGTGTGGCACAAGAGCAAGAACAAACTTCCCTTACAACCCCAATGCATCTCAGTCTTCATCTTCCAAGCTTCTCTCAGCAACTTTAACTGCTAAACTGCATAGGTGCTACATGGCTTCTTTGCAAATGACAAGGCCATCACAGCCAGAGCCTCAGAGAGTGGCTTCACCAAATGTCATCACCTCCGCAAGCAACTTCCCCATGAAGAGTAACGAAACTGCGACAATGTTGCCACAGAAGAGACAAGCGGAGGAGCAAGAAGCAGAGGGGAATTGGGTTTTCAAGAAGGTTAAGGTGGAGAGTGCTCAGCAATTCAAACCTCTTGAAGAGGACCACATCGAGCAAATGATAGAGGAGTTGCTGCATTACGGGTCCATTGAGCTATGCTCTGTGATTCCACCACAGGCTCTTTGA 573 0.4817 MARSQQRYRGVRQRHWGSWVSEIRHPILKTRLWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPNASQSSSSKLLSATLTAKLHRCYMASLQMTRPSQPEPQRVASPNVITSASNFPMKSNETATMLPQKRQAEEQEAEGNWVFKKVKVESAQQFKPLEEDHIEQMIEELLHYGSIELCSVIPPQAL 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00133 190 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Pumo10g00133 190 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Pumo10g00133 190 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 132 - -
Pumo10g00133 190 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Pumo10g00133 190 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Pumo10g00133 190 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Pumo10g00133 190 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Pumo10g00133 190 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Pumo10g00133 190 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Pumo10g00133 190 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00133 Pumo-Chr10 1997794 1998971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00133 1 190 AP2-EREBP Transcription Factor Family AT5G25190 66.842 7.53e-81 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo10g00133 AP2 1.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00133 - - gmx:100804510 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00133 10 1997794 1998971 Pumo10g00133 10 1997794 1998971 ECH
Pumo9g00591 9 9938301 9939561 Pumo10g00133 10 1997794 1998971 PCT