Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00132 ATGAGACAGATCTCTTATGCAAAGGCCTGGAACGTGAAGGTTACTCACATTATGCGTGAGGCTAATTCGGTGGCTGATTGTTTAGCCTCCAAGTCCCACCTCTCTCAGCAGGGACTGCTGTTTTTTGATACTCCTCCTCAGGAGTGTAAAGCTTTTCTTTGGTCTGATGCTATTGGGACTTTGTACCCACGTCATCCGTCGCACAAGACATTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGGCAGAACAGGCCCATCCCCTACTGGATCCGCATGAGGACCGACAACACCATCAGGTACAACGCGAAGCGCCGCCACTGGCGTCGCACCAAGCTTGGATTCTGA 348 0.5057 MRQISYAKAWNVKVTHIMREANSVADCLASKSHLSQQGLLFFDTPPQECKAFLWSDAIGTLYPRHPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00132 115 ProSitePatterns Ribosomal protein L39e signature. 94 110 IPR020083 GO:0003735|GO:0005840|GO:0006412
Pumo10g00132 115 Gene3D Ribosomal protein L39e 66 115 IPR023626 -
Pumo10g00132 115 FunFam 60S ribosomal protein-like L39 65 115 - -
Pumo10g00132 115 SUPERFAMILY Ribosomal protein L39e 67 114 IPR023626 -
Pumo10g00132 115 Pfam Ribosomal L39 protein 73 113 IPR000077 GO:0003735|GO:0005840|GO:0006412
Pumo10g00132 115 PANTHER RIBOSOMAL PROTEIN L39E 18 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00132 Pumo-Chr10 1987609 1992737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00132 66 115 Cytoplasmic Ribosomal Protein Gene Family AT4G31985 90.000 2.74e-28 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00132 K02924 - gmx:100306305 110.923