Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00130 ATGAAAATGAAGCTTCTCTTTATGCTTCTTATTCTTCCTCTTCTTCACCACGTCGCTGCAGAACCTCCTGCTTTCTCTCCAGAGAAGGAGAAGCATCACCTGAATAAGAAAGGGGTAATAATAGCTATCGTCGTAGCCACCACTGCACTTGCTGCACTCATTTTCAGTTTCTTATGCTTCTGGATATATCATACCAAGTATTCAACAAAATCCAAAACCAAAAATGTTCAAGCTCCAGATGCAGAGAAGGGGATCACCTTAGCACCTTTTGTGAGTAAATTCAGTTCCATCAAGATTGTTGGCATGAACGGGTCTGTTCCAATAATTGACTATAAGCAAATAGAAAAAACGACCAATAATTTTCAAGAAAGTAACATCTTGGGTGAGGGCGGTTTTGGATGTGTTTACAAGGCTCGCTTGGATCATAACTTGGATGTTGCAGTCAAAAAACTACACTGTGAGACTCAAAATGCTGAGAGAGAATTCGAGAACGAGGTGAATTTGTTAAATAAAATTCAGCATCCGAATATAATTTCTCTACTGGGTTGTAGCATTGATGGTGACACGAGGTTTATTGTCTATGAGCTGATGCAAAATGGATCATTGGAAACCCACTTACACGGACCTTCTCATGGCTCGGCATTGACTTGGCACATGAGGATGAAGATTGCTCTTGACACAGCAAAAGGATTAGAATATCTGCATGAGCACTGTTACCCTGCAGTGATCCATAGAGATATGAAATCTTCTAATGTTCTCTTGGATGCAAACTTCAATGCCAAGCTGTCTGATTTTGGTCTTGCCATAACTAATGGGTCCCAAAGCAAGAAGAACATTAAACTATCGGGTACCTTGGGATACGTAGCACCGGAGTATCTTCTAGATGGTAAACTAAGTGATAAAAGTGATGTCTATGCTTTTGGGGTTGTGCTATTGGAGCTCATATTAGGAAGGAAGCCAGTAGAAAAACTGGCACCAGCTCAATGCCAATCTATTGTCACATGGGCCATGCCACAGCTCACCGACAGATCCAAGCTTCCAAACATTGTGGATCCAGTGATTAAGAATACAATGGATCCCAAGCACTTATACCAGGTTGCTGCTGTAGCTGTGCTGTGCGTGCAACCTGAACCTAGTTACCGTCCACTGATCACAGATGTTCTTCACTCACTTATCCCTCTTGTTCCCATTGAGCTTGGAGGAACACTAAGAGTTTCACAAGTAATTTGA 1230 0.4179 MKMKLLFMLLILPLLHHVAAEPPAFSPEKEKHHLNKKGVIIAIVVATTALAALIFSFLCFWIYHTKYSTKSKTKNVQAPDAEKGITLAPFVSKFSSIKIVGMNGSVPIIDYKQIEKTTNNFQESNILGEGGFGCVYKARLDHNLDVAVKKLHCETQNAEREFENEVNLLNKIQHPNIISLLGCSIDGDTRFIVYELMQNGSLETHLHGPSHGSALTWHMRMKIALDTAKGLEYLHEHCYPAVIHRDMKSSNVLLDANFNAKLSDFGLAITNGSQSKKNIKLSGTLGYVAPEYLLDGKLSDKSDVYAFGVVLLELILGRKPVEKLAPAQCQSIVTWAMPQLTDRSKLPNIVDPVIKNTMDPKHLYQVAAVAVLCVQPEPSYRPLITDVLHSLIPLVPIELGGTLRVSQVI 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00130 409 SMART serkin_6 121 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g00130 409 FunFam probable receptor-like protein kinase At1g80640 197 396 - -
Pumo10g00130 409 Gene3D Transferase(Phosphotransferase) domain 1 197 396 - -
Pumo10g00130 409 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524
Pumo10g00130 409 PANTHER OS01G0750732 PROTEIN 31 393 - -
Pumo10g00130 409 Pfam Protein tyrosine and serine/threonine kinase 124 358 IPR001245 GO:0004672|GO:0006468
Pumo10g00130 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672|GO:0006468
Pumo10g00130 409 Gene3D Phosphorylase Kinase; domain 1 86 196 - -
Pumo10g00130 409 CDD STKc_IRAK 127 394 - -
Pumo10g00130 409 SUPERFAMILY Protein kinase-like (PK-like) 98 391 IPR011009 -
Pumo10g00130 409 FunFam Protein kinase superfamily protein 88 196 - -
Pumo10g00130 409 ProSiteProfiles Protein kinase domain profile. 121 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00130 Pumo-Chr10 1976964 1980159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00130 30 395 Receptor kinase-like Gene Family AT3G58690 42.359 4.73e-98 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Pumo10g00130 PK_Tyr_Ser-Thr 1.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00130 - - gmx:100784795 710.294