Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00124 ATGAGAGCTCTGAAGGTGAAAGGGATTTGTAGGATTTGCCATCTGACTTCTGGGCAGTCATCGGATGCAACAACTGTTGGCACTGCTAATAGTGCTACAAGTGCAGATTTGATTCAGCTTGGTTGTGCGTGTAAAGATGAGCTAGGCATTGCACACGTTCATTGTGCTGAGGCATGGTTCAAGCTTAAGGGGAACAGGTTATGTGAAATATGTGGTGAGGCTGCAAAAAATGTTTCAGGTGTTACAAGTAATGGATTTATGGAAGAGTGGAATGAAAGAAGATTCATGGACAGCGATGGTAACTCATCCCACAGGGTTGTTGGATGCTGGCGAGGACAGCCATTTTGTAACTTCTTGATGGCATGCCTGGTTATAGCGTTTGTTCTGCCATGGTTTTTTCGTGTAAATATGTTCTAG 417 0.4388 MRALKVKGICRICHLTSGQSSDATTVGTANSATSADLIQLGCACKDELGIAHVHCAEAWFKLKGNRLCEICGEAAKNVSGVTSNGFMEEWNERRFMDSDGNSSHRVVGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00124 138 PANTHER ZINC FINGER, RING-CH-TYPE 9 138 - -
Pumo10g00124 138 SMART ringv_2 9 72 IPR011016 GO:0008270
Pumo10g00124 138 SUPERFAMILY RING/U-box 9 73 - -
Pumo10g00124 138 ProSiteProfiles Zinc finger RING-CH-type profile. 2 78 IPR011016 GO:0008270
Pumo10g00124 138 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 83 IPR013083 -
Pumo10g00124 138 Pfam RING-variant domain 10 71 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00124 Pumo-Chr10 1928837 1931144 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00124 10 137 C3H Transcription Factor Family AT5G05830 42.857 2.11e-27 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00124 - - gmx:100791720 258.07