Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00120 ATGAACTGGCAGAATGCGAGGTTGAAGGCGGAGATTCTAGCGCACCCTCTGTACGAACAGCTTCTGTCGGCACACGTGGCGTGCTTGCGGATCGCCACGCCGGTCGACCAGTTGCCCAGGATCGACGCTCAGCTCGCACAGTCCCAGAATGTGGTCGCCAAGTACTCTGCCTTCGGACAAGCCATCGTTGGGGACGATAAAGAACTCGATCAGTTCTTGTCACACTATGTTCTGTTGCTCTGTTCTTTCAAAGAACAACTCCAACAGCATGTCCGGGTCCATGCAATGGAAGCAGTCATGGCTTGTTGGGAGATCGAGCAATCCTTACAAAGTCTTACAGGAGTTTCACCCGGGGAAGGTACGGGAGCAACAATGTCTGATGACGAAGATGACCAAGTAGACAGTGATGCCAATCTATTTGATGGTGGTTTGGATGGTCCTGATAGCATGGGATTCGGTCCTCTCATTCCCACAGAGAACGAGAGGTCCCTCATGGAACGTGTAAGACATGAATTAAAGCACGAATTGAAACAGGGTTATAAAGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCAGGTGACACGACCTCTGTCCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACAGAGGAGGATAAGGCACGGTTGGTGCAGGAAACGGGTTTGCAGTTAAAGCAGATCAATAATTGGTTTATCAATCAAAGGAAGAGGAACTGGCATAGTAATCCCTCAACTTCTACTGTCTTGAAGAGCAAGCGCAAAAGGCTTGTTGCCCCTTCAAGTGATTGTAAAGTCATAATCATGACATGGAATAACTCCGTGAAATTAGGAGGGTGA 876 0.4817 MNWQNARLKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGQAIVGDDKELDQFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDGGLDGPDSMGFGPLIPTENERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKRLVAPSSDCKVIIMTWNNSVKLGG 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00120 291 Gene3D - 192 253 - -
Pumo10g00120 291 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 60 255 - -
Pumo10g00120 291 FunFam homeobox protein knotted-1-like 3 isoform X1 192 253 - -
Pumo10g00120 291 Pfam KNOX2 domain 63 113 IPR005541 GO:0003677|GO:0005634
Pumo10g00120 291 Pfam Homeobox KN domain 211 250 IPR008422 GO:0003677|GO:0006355
Pumo10g00120 291 SMART KNOX2_2 59 114 IPR005541 GO:0003677|GO:0005634
Pumo10g00120 291 SMART ELK_2 171 192 IPR005539 GO:0003677
Pumo10g00120 291 Pfam ELK domain 171 192 IPR005539 GO:0003677
Pumo10g00120 291 ProSiteProfiles 'Homeobox' domain profile. 191 254 IPR001356 GO:0003677
Pumo10g00120 291 SUPERFAMILY Homeodomain-like 193 257 IPR009057 -
Pumo10g00120 291 ProSiteProfiles ELK domain profile. 171 191 IPR005539 GO:0003677
Pumo10g00120 291 CDD homeodomain 194 255 IPR001356 GO:0003677
Pumo10g00120 291 SMART HOX_1 193 258 IPR001356 GO:0003677
Pumo10g00120 291 Pfam KNOX1 domain 8 49 IPR005540 GO:0003677|GO:0005634
Pumo10g00120 291 SMART KNOX1_2 6 50 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00120 Pumo-Chr10 1850116 1853798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00120 1 268 Homeobox Transcription Factor Family AT5G25220 90.406 0.0 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pumo10g00120 KNOX2 7.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00120 - - pvu:PHAVU_009G090500g 533.872