Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00104 ATGGGGAAGCCCGCAGGGAAGAAGAAGGGTACCGCTACTCCAGGTGCCGCAAATTCACACGCCAAGCCCGGAAAGTTTTCCAAAGCTTTCGATGAAGACACGGCCATGTTCATCACCATGTCACAAGAGTTCAGGGAAGAAGGTAACAGGTTGTTTCAGAAGAAAGACCACGAAGGCGCCATGCTCAAGTACGAGAAGGCACTCAAGCTGCTCCCCAAGAACCACATAGATGTCGCGCACCTTCGTACCAACATGGCCACGTGTTACATTCAATTGGGTCTCGGGGAGTACCCTCGAGCCATTCACCAATGTAATTTGGCCTTGGAAGTGTCTCCCAGATACAGCAAAGCTCTTCTGAGAAGAGCCACCTGCTATCGTGCGCTTAATCGCTTCGATTTGGCGCTCAGGGATGTTCAACTTGTTTTGGGCATGGAACCTAATAACCTCACCGCGTTGGAGCTTCTCGAGAGTCTCGGAAAGTCAACGGAAGAAAAAGGGGTCTTTGTTGATGATAAAGGTGTCGCTTTTGATGCTACCGTTCATCACTCTCCCGCTCCTACTTCGCAAAAACTGAAGAAAAAGAGAGGTAAAAAAATTGAGGACAACAAGGTGGTTGTGGAGGAAAAAGTGAGTGCTGTTGAGGACAAGGTGGTTGTGGAGGAAAAAGTGACTAGTGTTGAGGACGAGGTGGTTGTGGAGGAAAAAGTGAGTGGTGTTGGGGACAAGGTGGTTGTGGAGGAAAACGTGAGTGGTGTGGAGGATAAACAAGTTGTTTCAAAAACGATTGAGCAAGAGAAAAGGGTGGTGGAGCCTGTGGAGGAAGAAAAATCTGTCACAGTCACAAGGAGTGTGAAGTTGGTGCTTGGAGAGGATATAAGGTGGGCAGAGCTACCCGTGAATTGTAGTGTGAAGTTGGTGAGGGATATAGCTAGGGATAGGTTTCCAGGTTTGAAGGGTGTTCTTGTCAAGTATAAGGATAAAGAGGGTGATTTGGTTACAATCACTACTACTGATGAACTAAGGTTAGCTGAAAAATCTGCTCCTGAGAAGGCAACGTTTAGGCTTTATATTACTGAGGTCAGTCCAGATCAAGAACCTTCTTATGATGGAAATGGAACAACCAATGGGGATGAAGTGCGAAGGGGTGGTGGAGAACCGAGTGATGGTGCTGAGAATGGGGCTATGGAAGAAGGAAAAAATAAAGATGTGGCAAAAAGGATGATTACTGTGGAGGACTGGCTTCTCCAGTTTGCAAGGCTGTTCAAGAACCATGTAGGGTTTGAGTCTGATTCATATCTAGATACTCATGAGTATGCAATGAAGCTGTATGAAGAAGCAATGGAGGATACGGTGGCAAGCAATGATGCTCAAGAACTTTTTGGAATTGCTGCGGATAAATTTCAAGAGATGGCAGCTTTGGCATTGTTTAATTGGGGGAGTGTCCAAATGTCCAGGGCAAGGAACCAGGGTTTCTTTTCAGAGGATGGGGCAAGAGAATCTTCCTTGGAGCATATAAAAGCCGCATATGAGTTGGCGCAAAAGGAGTACAAGAATGCAGAAATGAGATATGAAGAAGCCTTGAAAATCAAACCTGACTTCTATGAAGCGTATCTTGCTCTTGGGCATCAGCAGTTTGAGCAAGCAAGGCTGTGCTGGTGTTATGCAATGGCATGCAAGGAAGCTGGCTTTTCTGATGAGGTTCTACAACTTTATAACAAGGCTGAGGACAGCATGGAGAAAGGCATCTTGATGTGGGAGGAGATTGAGGAGCAGCGTTTGAATGGAATATCCAAATCAGATAAATATAAAGAACAGTTAGAGAAAATGGGCTTGGATAGTCTTCTCCAAGATATTTCTGATGATGAAGCTTCAAAGCAAGCTGCAAAGATGAGGTCTCAGATACATCTTTTATGGGGAACCTTGTTGTATGAACGTTCAGTTGTGGAGTATAAGCTTGGCCTTCCCACATGGGAGGAATGTTTGGAGGTTGCAGTCGAAAAGTTTGAACTAGCTGGAACTTCTGCAACGGATATTGCTTTCATTGTAAAGAATCACTGCTCAAATGAAACAGCACTTGAAGGGTTCAAAATTGATGAGATAGTACAGGCATGGAATGAGATGTATGATGCTCAGGGGTGGCAGTTTGGTGATCCATCATTTCGACTTGAACCGTTGTTTCGTCAGCGTGTTCCTAAACTCCATTACATCTTGGAGCAATTTTAA 2223 0.4516 MGKPAGKKKGTATPGAANSHAKPGKFSKAFDEDTAMFITMSQEFREEGNRLFQKKDHEGAMLKYEKALKLLPKNHIDVAHLRTNMATCYIQLGLGEYPRAIHQCNLALEVSPRYSKALLRRATCYRALNRFDLALRDVQLVLGMEPNNLTALELLESLGKSTEEKGVFVDDKGVAFDATVHHSPAPTSQKLKKKRGKKIEDNKVVVEEKVSAVEDKVVVEEKVTSVEDEVVVEEKVSGVGDKVVVEENVSGVEDKQVVSKTIEQEKRVVEPVEEEKSVTVTRSVKLVLGEDIRWAELPVNCSVKLVRDIARDRFPGLKGVLVKYKDKEGDLVTITTTDELRLAEKSAPEKATFRLYITEVSPDQEPSYDGNGTTNGDEVRRGGGEPSDGAENGAMEEGKNKDVAKRMITVEDWLLQFARLFKNHVGFESDSYLDTHEYAMKLYEEAMEDTVASNDAQELFGIAADKFQEMAALALFNWGSVQMSRARNQGFFSEDGARESSLEHIKAAYELAQKEYKNAEMRYEEALKIKPDFYEAYLALGHQQFEQARLCWCYAMACKEAGFSDEVLQLYNKAEDSMEKGILMWEEIEEQRLNGISKSDKYKEQLEKMGLDSLLQDISDDEASKQAAKMRSQIHLLWGTLLYERSVVEYKLGLPTWEECLEVAVEKFELAGTSATDIAFIVKNHCSNETALEGFKIDEIVQAWNEMYDAQGWQFGDPSFRLEPLFRQRVPKLHYILEQF 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00104 740 SMART tpr_5 500 533 IPR019734 GO:0005515
Pumo10g00104 740 SMART tpr_5 41 74 IPR019734 GO:0005515
Pumo10g00104 740 SMART tpr_5 115 148 IPR019734 GO:0005515
Pumo10g00104 740 SMART tpr_5 79 114 IPR019734 GO:0005515
Pumo10g00104 740 PANTHER PROTEIN CLMP1 1 738 IPR044517 -
Pumo10g00104 740 SMART PB1_new 281 360 IPR000270 GO:0005515
Pumo10g00104 740 MobiDBLite consensus disorder prediction 362 400 - -
Pumo10g00104 740 Gene3D Tetratricopeptide repeat domain 401 592 IPR011990 GO:0005515
Pumo10g00104 740 Coils Coil 502 529 - -
Pumo10g00104 740 SUPERFAMILY TPR-like 42 537 IPR011990 GO:0005515
Pumo10g00104 740 Gene3D - 273 360 - -
Pumo10g00104 740 SUPERFAMILY CAD & PB1 domains 279 368 - -
Pumo10g00104 740 Gene3D Tetratricopeptide repeat domain 38 166 IPR011990 GO:0005515
Pumo10g00104 740 MobiDBLite consensus disorder prediction 1 26 - -
Pumo10g00104 740 CDD PB1 289 358 - -
Pumo10g00104 740 Pfam PB1 domain 281 358 IPR000270 GO:0005515
Pumo10g00104 740 ProSiteProfiles PB1 domain profile. 281 360 IPR000270 GO:0005515
Pumo10g00104 740 ProSiteProfiles TPR repeat profile. 115 148 IPR019734 GO:0005515
Pumo10g00104 740 ProSiteProfiles TPR repeat profile. 41 74 IPR019734 GO:0005515
Pumo10g00104 740 SUPERFAMILY TPR-like 469 579 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00104 Pumo-Chr10 1730114 1734965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00104 29 148 Calmodulin-binding Proteins AT3G25230 31.008 2.74e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00104 K26538 - gmx:100805760 1278.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00611 9 10456517 10457398 Pumo10g00104 10 1730114 1734965 PCT