Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00086 ATGGAGCTTCAGTTAGGTCTTGCTCTCCCCACTCACAAATCGGTTGAGGAATTCAAGCTCAACAAGTCGAAACAGATAGTGGGTTTAGAGTTATGGAGACCCAGTTGCGGTTCTGAAAGCGAAAAGCATGTCAAACACAATAAGCGCAGCTTCGAAGAGTCCTTTGAACATTTTTTTAAACCTTTGCCTTTACTAGTATGGAGTGGACAGCCAAATGAAGAAGATGACTGTAGTGAAAAGATGCAAAGAAACATTCACACACCAAACAAGAATGGTGATGAAGAAAACCATTTGGTGGGGTGGCCACCAGTTAAATCATGGAGGAGGAAAGAACTCCATCAGCAGCATCCTGCAAGAGGCCAAATTAGGAACGATAGGATTCAAGCTAATGAGAATCAAAGTAGAGGACCAAACTCTTTATATGTCAAGGTTAACATGGAAGGGGTAGCCATAGGAAGGAAAATCAATTTGAGGCTTTTCAACTCTTATCAGACACTTACAGGCACCTTGATCAACATGTTTGCCAAATACCAAAAATTTGAGGAAGTTGGAGAAAGTTACACACTCACCTTTCAAAACGAACAAGGGGATTGGCTGCAAGTAGGACATGTTCCATGGCAATCCTTTATTGGTACTGTGCGGCGTTTGGTGATACTGAGGAATGGAAGTGAAACTATTTGA 681 0.4185 MELQLGLALPTHKSVEEFKLNKSKQIVGLELWRPSCGSESEKHVKHNKRSFEESFEHFFKPLPLLVWSGQPNEEDDCSEKMQRNIHTPNKNGDEENHLVGWPPVKSWRRKELHQQHPARGQIRNDRIQANENQSRGPNSLYVKVNMEGVAIGRKINLRLFNSYQTLTGTLINMFAKYQKFEEVGESYTLTFQNEQGDWLQVGHVPWQSFIGTVRRLVILRNGSETI 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00086 226 Gene3D - 140 225 - -
Pumo10g00086 226 ProSiteProfiles PB1 domain profile. 139 226 IPR000270 GO:0005515
Pumo10g00086 226 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 221 IPR003311 GO:0005634|GO:0006355
Pumo10g00086 226 Pfam AUX/IAA family 2 224 IPR033389 -
Pumo10g00086 226 SUPERFAMILY CAD & PB1 domains 133 216 - -
Pumo10g00086 226 MobiDBLite consensus disorder prediction 112 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00086 Pumo-Chr10 1545642 1547405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00086 131 218 B3 DNA Binding Superfamily AT1G59750 34.091 1.53e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pumo10g00086 AUX_IAA 1.6e-25 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00086 K14484 - gmx:100802759 428.328