Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00076 ATGCCGCATTTGCTGCACGGAAGGCTCGATGTGATCATATATGAGGTCGACACACTATCAACTCCTAACGAGTGCAATCTCAATCTCTGCTGCAAGGGTACAAGTAGAAGCGTGAGGAAGAGATTTCTTTCCCAACTCAAGAGTTGTATGCTCTGTCAATGCCAATGCCAGCCCGAGTTTGTCGAGACGGGCCTCTATGCAACAGTTGATTTAGATAAGGCAAGGGTTGGAAGGACTAGACTGTTAAATCATCAATCCTCCAATCCCACGTGGAACGAGACCTTTCACTTATACTGTGCCCATTTGATCTCTCATGTTATATTCACTGTCAAACAAAAAGATGCAATTGATGCAACTCTAATTGGAAGAGCTTATGTCCCAGTTGAGCAAGTTGTGAATGGCAACATAGTGGATACATGGGTCCAAATATTAGACGAGGATCACAACCCCATACCAAGTGACTCTAAAATCCATGTCAAAATGCAGTTCTCTGATGTTAGGAATGACACAAACTGGTCTCAAGGAATAAGGAGTCCAAGGTTTCAAGGAGTTCCCCACACCTTTTTTAGTCAAAAAAATGGTTGCAAAGTTACTTTGTACCAAGATGCCCATGTTTCAGATGGTTTTGAGCCGTGGATCCTCTTATCAGGAGGAAAACCTTATGAGTATAGAAAATGTTGGGAGGATATTTACAATGCCATTACGAATGCTAGGAACTTTATTTACATAACTGGTTGGTCTGTGTACACTGAAATAACCTTGATCAGGGACCCAATGAAGCCTAGAACAAGAATCACCCTTGGGGAACTGCTCAAGATGAAAGTTGAGGAAGGTGTTAAGGTTCTTATGCTTGTTTGGGATGACAGAACCTCTGTGCCAGATTTCAAGAAAGATGGCTTGATGGCAACTCATGATCAAGAAACTGCTGAATACTTCAAAAACACAAAGGTCAATTGTGTTTTGTGTCCACGGAACCCGGATGAGGGAAGAAGCATAGTGCAAGGTTTTGAAACTTCAACAATGTTCACTCATCACCAAAAGACTATAATTGTTGACAGCCAAGTTGTTGGTGCTGCCATGGGACAACGACAAAAGAGAACAATAGTAAGTTTTGTAGGTGGCATTGATCTTTGTGATGGGAGATATGATACTCAGGAACATCCTCTATTTTCAACTTTGGATACAGTGCACAAAGATGATTTCCATCAGCCAAATTTCCCAGGTGCTTCCATCAAGAAAGGTGGTCCAAGAGAGCCATGGCATGACATTCATTGCAAGTTAGAAGGGTCTGTTGCTTGGGATGTTTTGCTCAATTTTCAACAAAGGTGGGAGAAGCAGGTTGGGAATCAGCTCCTATTCTCTTCAAGCATGCTTGATAAATACTTTGTCCCTCGATCCACTGTGGCAACAACAAATGAAAATGAGACATGGAATGTTCAGTTGTTCAGATCCATTGATGGTGGTGCTGCTTCTGGCTTCCCCCAAGACCCAGAAGAAGCGGCTGAACTAGGCCTTGTTAGTGGGAAAGATAACATCATTGATAGAAGCATTCAAGATGCTTATATTAATGCTATTCGACGTGCCAAAAACTTCATCTACATTGAGAACCAGTACTTCCTAGGGAGTTCATATGGTTGGCAAGCAAATGGTGATATTGTGGTTGCAGACATTGGTGCTTTGCATCTTATACCAAAGGAGCTGTCATTGAAGATTGTTAGCAAGATTGAAGCAGGAGAGAGGTTTTCAGTGTATGTTGTTATACCAATGTGGCCAGAAGGCATACCTGAGAGTGGTTCAGTTCAAGCAATATTAGACTGGCAAAGGAGAACAATGGAGATGATGTATGCTGATATAGCCAAAGCCATTCAGAGAACAGGAATTGAAGCCCACCCAAGGGACTACTTGACCTTTTTCTGCCTTGGAAACCGTGAGGGTAAGAAGGATAGGGAATATACTCCTACTGAGGCACCAGAGCCTGATAGTGATTATGGTAGAGCACAAAAGTCTAGGCGATTCATGATCTATGTTCATGCCAAGATGATGATAGTTGATGATGAATACATAATAATTGGTTCTGCCAACATAAACGAAAGATCAATGGATGGAGCAAGAGACACTGAGATTGCAATGGGTGCATTCCAACCACGTCATATAGCATACAATGGGCAACCCAGAGGACAAATATATGGATTTCGACGTGCACTATGGCATGAGCACCTCGGTGATCATAATGATGCAAGCATCTTTGACAATCCAGAAAGTGTGGACTGCATCAGGCTTGTGAATCATCTTGCTGAAACCAACTGGGACATATACTCTGAAGAAACTTTTGATGAGAATATAGAATTTCACCACCTCATGCGATATCCCATAGAAGTAACCAACAATGGAGCCATAACAACCCTTCCAGGGCTAGAACATTTTCCTGACACCAAGGCTAAGATTTTGGGTTCCAAATCAGATTACCTACCTCCAATTCTCACCACCTAG 2490 0.4233 MPHLLHGRLDVIIYEVDTLSTPNECNLNLCCKGTSRSVRKRFLSQLKSCMLCQCQCQPEFVETGLYATVDLDKARVGRTRLLNHQSSNPTWNETFHLYCAHLISHVIFTVKQKDAIDATLIGRAYVPVEQVVNGNIVDTWVQILDEDHNPIPSDSKIHVKMQFSDVRNDTNWSQGIRSPRFQGVPHTFFSQKNGCKVTLYQDAHVSDGFEPWILLSGGKPYEYRKCWEDIYNAITNARNFIYITGWSVYTEITLIRDPMKPRTRITLGELLKMKVEEGVKVLMLVWDDRTSVPDFKKDGLMATHDQETAEYFKNTKVNCVLCPRNPDEGRSIVQGFETSTMFTHHQKTIIVDSQVVGAAMGQRQKRTIVSFVGGIDLCDGRYDTQEHPLFSTLDTVHKDDFHQPNFPGASIKKGGPREPWHDIHCKLEGSVAWDVLLNFQQRWEKQVGNQLLFSSSMLDKYFVPRSTVATTNENETWNVQLFRSIDGGAASGFPQDPEEAAELGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSYGWQANGDIVVADIGALHLIPKELSLKIVSKIEAGERFSVYVVIPMWPEGIPESGSVQAILDWQRRTMEMMYADIAKAIQRTGIEAHPRDYLTFFCLGNREGKKDREYTPTEAPEPDSDYGRAQKSRRFMIYVHAKMMIVDDEYIIIGSANINERSMDGARDTEIAMGAFQPRHIAYNGQPRGQIYGFRRALWHEHLGDHNDASIFDNPESVDCIRLVNHLAETNWDIYSEETFDENIEFHHLMRYPIEVTNNGAITTLPGLEHFPDTKAKILGSKSDYLPPILTT 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00076 829 PANTHER PHOSPHOLIPASE D 4 818 IPR015679 -
Pumo10g00076 829 SMART C2_3c 46 140 IPR000008 -
Pumo10g00076 829 FunFam Phospholipase D delta 217 460 - -
Pumo10g00076 829 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 63 166 IPR035892 -
Pumo10g00076 829 SUPERFAMILY Phospholipase D/nuclease 169 453 - -
Pumo10g00076 829 SMART pld_4 672 699 IPR001736 GO:0003824
Pumo10g00076 829 SMART pld_4 340 381 IPR001736 GO:0003824
Pumo10g00076 829 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 672 699 IPR001736 GO:0003824
Pumo10g00076 829 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 340 381 IPR001736 GO:0003824
Pumo10g00076 829 PIRSF PLD_plant 1 829 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Pumo10g00076 829 Gene3D Endonuclease Chain A 486 716 - -
Pumo10g00076 829 ProSiteProfiles C2 domain profile. 1 141 IPR000008 -
Pumo10g00076 829 FunFam Phospholipase D 484 718 - -
Pumo10g00076 829 Pfam Phospholipase D C terminal 748 819 IPR024632 -
Pumo10g00076 829 SUPERFAMILY Phospholipase D/nuclease 505 742 - -
Pumo10g00076 829 Gene3D C2 domain 56 175 IPR035892 -
Pumo10g00076 829 Gene3D Endonuclease Chain A 217 475 - -
Pumo10g00076 829 CDD C2_plant_PLD 1 163 - -
Pumo10g00076 829 Pfam C2 domain 63 142 IPR000008 -
Pumo10g00076 829 Pfam Phospholipase D Active site motif 340 381 IPR001736 GO:0003824
Pumo10g00076 829 Pfam Phospholipase D Active site motif 673 699 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00076 Pumo-Chr10 1428330 1432683 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00076 3 829 Phospholipase D Gene Family (Wang group) AT3G15730 62.967 0.0 1080
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00076 K01115 - gmx:100791688 1568.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00076 10 1428330 1432683 Pumo7g00157 7 1817261 1821748 ECH
Pumo10g00076 10 1428330 1432683 Pumo4g04324 4 84258509 84264006 ECH
Pumo10g00076 10 1428330 1432683 Pumo10g00075 10 1418252 1422770 ECH
Pumo10g00076 10 1428330 1432683 Pumo10g00076 10 1428330 1432683 ECH