Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00075 ATGCCTCAGCTGCTACACGGGACGCTTAAGGTAACCATATTTGAAGTTGATAGACTACATACTGGGTGTCATTTGGATTTCTGCCAGAAGGGCACAACACACAAGGGGAAGAGATTTCTGGCCCAAGTCAAGGGTTGTCTGCTATGCCGGCCTGAGATTGTTGGGACGAGACTCTATGCAACAGTTGATTTAGACAAGGCAAGGGTTGGACGAACGAGAATGATAGGAAACCAACCTTCTCACCCGAGGTGGAACGAGACCTTTGAAATCTACTGTGCCCATCAAATCTCAAACATTATATTCACTGTCAAAGACGGTAACCCAATTGGAGCAACTCTGATTGGAAGAGCCTATGTCCCCGTTGAGCAAGTTCGCAAGGGCCCCATAGTTAAGCGATGGGTTGAGATACTAGACGAAGAAGATCACCGTCCTGTACCTGGCCACTCCAAAATCTGTGTCAGCGTGCAATTCTGCGATGTCACCGATGACACAACATGTCTATGGTCTCAGGGAATAATGATGCCATTCTTGGGTGTTCCTCGTACATTTTTCAATCAAAGAGAAGGTTGCACTGTTACTTTGTACCAAGATGCTCATGCCCCACGTGGCATTGGTGTTGTCCCATATATTCCAATATCCGATGGAAAGGATTACATGCCTGCAATGTGTTGGGAGAACATTTACAAAGCCATTGTGGAAGCCAAGCACTTTATTTACATAGCTGGTTGGTCCGTTGACACTAAAATAGCCTTAGTTAGAGACATAGAGGAATTAAACATCACCCTTGGGGAGTTACTTAAGAAGAAAGCTGATGAGGGTGTCAAAGTTCTCTTGCTTATTTGGAATGACAGAACTTCTGTTCCGGAATTGAAAGATGGCTTGATGGCAACACATGGTCAGGAAACTGCTGGTTACTTCAGAGGCACAAAGGTGAATTGTGTTTTGTGTCCGCGGAACCCGTCTGATGGAAGAAGCGTGGTTCAAGGCCTTCAAATCTCAACGATGTTCACTCATCACCAGAAGAGTGTAGTGGTTGATGGCGATGTTGTAGGATCACAGAAGAGGAGTGTCATAAGTTTCATAGGTGGCATTGATCTTTGTGATGGGAGGTATGATACCAGGGATCATCCTCTATTTTCAACTTTGAATACAGTGCATAGAAATGATTTCCATCAGCCAAATTTCCCAAATGCTTCCATAGATAAAGGTGGTCCAAGAGAGCCATGGCATGACATTCATTGCAAGCTAGAAGGGCCTATTGCTTGGGATGTTTTGTACAATTTTGAGCAAAGGTGGGAGAAGCAAGCTGAGAAGCAAGTTGAGAAGAAGTTATTCTCACTTGATGTTCTTGATGAAATTCTGTTGTTTAGATCCATTGATGGTGGTGCTGCTTTTGGCTTTCCCCAAGCCCCAAATGATGTTACTGAATTAGGCCTTGTTACTGGGAAAGACAATGTCATTGAGAGAAGCATTCAGGATGCCTACATTCATGCTATTAGGCGTGCAAAAAACTTCATCTACATTGAGAACCAGTACTTCCTAGGGAGTTCATATGGTTGGCAAGCAACTGGTGATATTGTGGTTGAGGACATTGGTGCTTTGCATCTTATACCAAAGGAGATATCATTGAAGATTGTAAGCAAGATTGAAGCAAAAGAGAGGTTTTCTGTGTACATAGTGATCCCAATGTGGCCAGAAGGTGCACCTGACAGTGATTCGGTTCAGGCAATCTTGGATTGGCAAAGGAGGACCATGGAGATGATGTATTCTGACATTGCTGATGCCTTAAAAAGAACAGACATTCAAGCACACCCTCTAGATTATTTGACATTTTTTTGCCTTGGCAAGAGGGAGCATAAGGAACAAGGAGAGTATACTCCTCCAGAGGAACCAGAGCCTGAGAGTCACTATAGTAGAGCACAAAATTCTAGGAGGTTCATGATATATGTTCATTCCAAAATGATGATAGTTGATGATGAATACATAATCGTTGGTTCTGCTAACATAAATGAAAGATCAATGGAGGGTGCAAGAGACAGTGAGATTGCAATGGGTGCATTCCAACCACGTCATCTAGCATCGAGTGGGCGACCCAGAGGGGAGATATATAGATTTCGACGTGCACTATGGTATGAGCACCTTGGGGATGATGGTTTTGGGTCAAAAATCTTCGACCATCCAGAACATTTGGACTGCATCAATCACGTGAATAATCTTGCTGAGGCCAACTGGGACATGTACTCAAAGGAAACATTTGTTGAAAACAATAGACAATTTCACCACCTAATGTGCTACCCCATACAAGTAACCAATGATGGAGCCATAACAAACCTTCCCGGGTTTGAATGTTTTCCTGACACCAAGGCTCGGATTTTGGGTTGCAAATCAAAACTCTTTCCTCCAATTCTCACCACTTAG 2418 0.4355 MPQLLHGTLKVTIFEVDRLHTGCHLDFCQKGTTHKGKRFLAQVKGCLLCRPEIVGTRLYATVDLDKARVGRTRMIGNQPSHPRWNETFEIYCAHQISNIIFTVKDGNPIGATLIGRAYVPVEQVRKGPIVKRWVEILDEEDHRPVPGHSKICVSVQFCDVTDDTTCLWSQGIMMPFLGVPRTFFNQREGCTVTLYQDAHAPRGIGVVPYIPISDGKDYMPAMCWENIYKAIVEAKHFIYIAGWSVDTKIALVRDIEELNITLGELLKKKADEGVKVLLLIWNDRTSVPELKDGLMATHGQETAGYFRGTKVNCVLCPRNPSDGRSVVQGLQISTMFTHHQKSVVVDGDVVGSQKRSVISFIGGIDLCDGRYDTRDHPLFSTLNTVHRNDFHQPNFPNASIDKGGPREPWHDIHCKLEGPIAWDVLYNFEQRWEKQAEKQVEKKLFSLDVLDEILLFRSIDGGAAFGFPQAPNDVTELGLVTGKDNVIERSIQDAYIHAIRRAKNFIYIENQYFLGSSYGWQATGDIVVEDIGALHLIPKEISLKIVSKIEAKERFSVYIVIPMWPEGAPDSDSVQAILDWQRRTMEMMYSDIADALKRTDIQAHPLDYLTFFCLGKREHKEQGEYTPPEEPEPESHYSRAQNSRRFMIYVHSKMMIVDDEYIIVGSANINERSMEGARDSEIAMGAFQPRHLASSGRPRGEIYRFRRALWYEHLGDDGFGSKIFDHPEHLDCINHVNNLAEANWDMYSKETFVENNRQFHHLMCYPIQVTNDGAITNLPGFECFPDTKARILGCKSKLFPPILTT 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00075 805 Gene3D C2 domain 6 168 IPR035892 -
Pumo10g00075 805 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 160 IPR035892 -
Pumo10g00075 805 SUPERFAMILY Phospholipase D/nuclease 488 715 - -
Pumo10g00075 805 Pfam C2 domain 8 135 IPR000008 -
Pumo10g00075 805 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 334 370 IPR001736 GO:0003824
Pumo10g00075 805 Gene3D Endonuclease Chain A 466 690 - -
Pumo10g00075 805 CDD C2_plant_PLD 1 157 - -
Pumo10g00075 805 Pfam Phospholipase D C terminal 722 795 IPR024632 -
Pumo10g00075 805 SMART pld_4 646 673 IPR001736 GO:0003824
Pumo10g00075 805 SMART pld_4 334 370 IPR001736 GO:0003824
Pumo10g00075 805 ProSiteProfiles C2 domain profile. 1 134 IPR000008 -
Pumo10g00075 805 FunFam Phospholipase D 458 692 - -
Pumo10g00075 805 PANTHER PHOSPHOLIPASE D 4 793 IPR015679 -
Pumo10g00075 805 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 646 673 IPR001736 GO:0003824
Pumo10g00075 805 FunFam Phospholipase D delta 214 449 - -
Pumo10g00075 805 Pfam Phospholipase D Active site motif 334 370 IPR001736 GO:0003824
Pumo10g00075 805 Pfam Phospholipase D Active site motif 647 673 IPR001736 GO:0003824
Pumo10g00075 805 SUPERFAMILY Phospholipase D/nuclease 179 439 - -
Pumo10g00075 805 Gene3D Endonuclease Chain A 216 449 - -
Pumo10g00075 805 PIRSF PLD_plant 1 454 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Pumo10g00075 805 PIRSF PLD_plant 451 805 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Pumo10g00075 805 SMART C2_3c 8 133 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00075 Pumo-Chr10 1418252 1422770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00075 3 805 Phospholipase D Gene Family (Wang group) AT3G15730 60.624 0.0 978
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00075 K01115 - gmx:100794115 1471.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00075 10 1418252 1422770 Pumo10g00075 10 1418252 1422770 ECH
Pumo10g00076 10 1428330 1432683 Pumo10g00075 10 1418252 1422770 ECH