Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00074 ATGGTACAAGCAAAGAAGTTCAGAGGAGTCAGGCAACGCCAGTGGGGCTCCTGGGTGTCAGAAATTCGCCACCCTTTACTGAAGAGAAGGGTGTGGCTAGGGACATTTGAGACAGCTGAGGCTGCAGCAAGGGCTTATGACCAAGCAGCCATTTTGATGAATGGTCAGAATGCAAAGACCAATTTCCCCACCTCAAAGAACCAAGCTGATGCCACCACCACCACCAACCCTGGTGACAACAACACTTTCTTATCTCCAAAAGCTCTTTCAGAACTCCTCAGCACAAAGCTGAGAAAGTACTGCAAAGACCCTGCTCCTTCCCTCACTTGTCTGAGGCTAGATGCTGATAATTCCCACATTGGAGTCTGGCAAAAAGGGGCAGGACCACATTCTGGCTCCAACTGGGTCATGAGGGTCGAGCTTGGCAAGAAACAAACCCAGGGTGAGTCAACGGGGTCACCACACAGTACTAATGATTCTGCTGGATTAATAAATAATGAAGTAGAAGTAGAAGAAGAAGAAGAAGAGGATAGAGTTGCTTTGCAGATGATTGAAGAACTACTCAATTGGAACTAG 576 0.4757 MVQAKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKTNFPTSKNQADATTTTNPGDNNTFLSPKALSELLSTKLRKYCKDPAPSLTCLRLDADNSHIGVWQKGAGPHSGSNWVMRVELGKKQTQGESTGSPHSTNDSAGLINNEVEVEEEEEEDRVALQMIEELLNWN 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00074 191 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Pumo10g00074 191 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Pumo10g00074 191 MobiDBLite consensus disorder prediction 60 83 - -
Pumo10g00074 191 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Pumo10g00074 191 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Pumo10g00074 191 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Pumo10g00074 191 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Pumo10g00074 191 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Pumo10g00074 191 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Pumo10g00074 191 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 149 - -
Pumo10g00074 191 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00074 Pumo-Chr10 1412911 1414997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00074 1 190 AP2-EREBP Transcription Factor Family AT5G25390 62.105 6.75e-77 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pumo10g00074 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00074 - - gmx:100806821 311.997
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00074 10 1412911 1414997 Pumo10g00074 10 1412911 1414997 ECH
Pumo4g01065 4 13668342 13669944 Pumo10g00074 10 1412911 1414997 ECH