Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00052 ATGTCGACGCGTGCGAAGAAGATGTTTGCAAGGTTGTGTGGCAGCCATGACGAGGCTGCGGATGATGAGAGACACAGAGATCGCATAGAGATTGAGCAAATGTCCAATGATGGAAGCCAATACAGCCTCAACGGTATTCCGCTTCCGTCTCTTGGCGCGGCCGGCGCCGGCCGCTCCCAGAGACACAAGCTCCGGAGTTTCATTATCTCGCCGTACAACCCTCGTTACAGATTGTGGGAGACGTTTCTGGTGTTCTTAGTTTTCTACACTGCATGGGTTTGCCCGTTTGAGTTTGGATTCCTTAATAATCCGAAGGATCCTCTTGCCACTACTGACGATGTGGTGAATGGTTTTTTTGCCATTGACATTATTCTGACCTTCTTTGTTGCCTACCTGGACAAGTCTACATATCTGCTGGTGGACCAACCAAAGCTCATTGCCTGGAGATATATCAGAACATGGTTCGCCTTTGATGTCATCTCCACCATCCCTTCTGAACTTGCCCGCAGCGTATTGCCTAAAATTTTTAAGACATATGGCTACTTTAACATGCTCCGTCTTTGGCGTCTCCGTAGAGTTAGTGCCATGTTTGCAAGATTAGAAAAGGACAGAAATTATAACTACTTCTGGGTGCGCTGTTCAAAGCTTATATGTGTTACTCTATTTTCAGTGCATTTTGCTGCCTGCTTTTTCTATTTTCTTGCTTTAAACCGTCAACCAAGTTCAACATGGCTTAGCCTGGTTTCTGATGACGCTCAAAACGGTCTTTGGAAGCGCTATGTAACATCGATGTACTGGTCCATAGTGACTCTTTCCACAGTCGGTTATGGTGACTTGCATCCAGTTAATACCAAGGAGATGGTGTTTGACATATTTTATATGCTCTTTAACCTGGGACTAACGGCATATCTCATCGGAAACATGACAAACTTGGTTGTTCATGGGACAAGCAGAACTAGGAAATATAGAGACACGGTGCAAGCTGCCACAGGTTTTGCCCATCGGAATCAGTTACCTATCCGCTTGCAAGAACAGATGCTTGCTCATTTGTTTATGAAGTACAGAACTGATTTAGAAGGATTGCAGCAACAAGAAATTATTGAATCCCTTCCAAAGGCTATTCGATCTAGCATCTCACACTACCTATTCTATCCACTTGTGGACAAAGTGTACTTGTTTCATGGAGTGTCAACTGACCTAATCTTTCAACTGGTCACGGAGATGAGGGCTGAGTATTTTCCTCCAAAGGAAGATGTGGTTTTGCAGAATGAAGCGCCAACAGACTTTTATATCTTTGTTACTGGTGCTGCAGAACTGATCATTAGAAAGAATGGAATGGAACAGGTCGTTGGTGAGGTAGTGTCAGGAGATGTAGTTGGAGAAATAGGAGTTCTATGTTACAGGCCACAGGTGTTTACAGTTCGAACCAAACGGTTGAGCCAAATTCTGCGCTTGAACCGTACTACATTTCTAAATCTTGTTCATTCAAATATTGGAGATGGAACAATAGTCATGAACAATTTTCTCCAGCATTTGCAAGAATCAAGGTATCCAGGGATGGATGCTATTTTGGCAGAAACGGAGGCCATGCTTGCTCGGGGTAAAATGGACATGCCCATTACCACATGCTTTGCAGCAAGCAGAAATGATGATCTATTGTTGCATCGTTTGCTTAAGAAGGGTTCAGATCCAAATGAATTAGATAAGAATGGAAAGACAGCACTGCATATTGCAGCTTCCAAAGGCAATGAGCATTGTGTAACTTTGCTTCTAGAATATGGTGCTGATCCCAATAGCAAAGATATGGACGGAAGTGTCCCACTATGGGAAGCAATGAAGGGTAGGCATGAGTCGGTGATGAAACTTCTCATAGACAATGGTGCAGACATATCTTTAGCCGATGCAGGCCATCTAGCATGCAGTGCTGTTGAGCAAAATAACATGGAATTGCTCAAGGAAATAATTCAATGTGGTGTGGATGTGACACAACCCAAGAAGAATGGAACCACTGCTCTTCACACTGCAATATTTGAAGGGAACACTGAGATGATTAACTTCCTTGTAGACCAAGGAGCAGACATTGACATGCAAGATGCTAATGGGTGGACTCCCAGGGCTTTGGTAGAACAACACGAGAGCGAAGAAATTAAAAATGTATTCCAGAACATTAGAGAGAGCAGAAAACCAGGTGTTATTCCAATATCAAAGAATGACAACCGGAGTGGGAGGTTTCAAATTGATCCCAGCATGCCACTGCTACCTTATCATGGGAGGAGAAGGTCTACCAGCTCTTTTGATAATTCCATTTTTGGAATGATCTCAACTGCCAACCGTGATAAGAGAGATCCCCGGGCACCTGAAGGCAGTAACACTAATAGAGGGGATGTGAATGGATTAACCAGAGTGACAATTAGTTGTCCTGAAAAAGGTGACCATGCTGGAAAGCTTGTTTTGCTGCCTAAGTCCCTTGAAGAGCTATTAGATATTGGTGCAAGAAAGTTTGATATATCTCCCACCAAAATTTTGACCATAGATGGAGCTGAAGTAGATGATATAAATCTTGTAAGAGATGGTGATCATCTTATTATTGCCGGATTGAAGAGGGAAGAAAGAATTGATTCCTAA 2625 0.4324 MSTRAKKMFARLCGSHDEAADDERHRDRIEIEQMSNDGSQYSLNGIPLPSLGAAGAGRSQRHKLRSFIISPYNPRYRLWETFLVFLVFYTAWVCPFEFGFLNNPKDPLATTDDVVNGFFAIDIILTFFVAYLDKSTYLLVDQPKLIAWRYIRTWFAFDVISTIPSELARSVLPKIFKTYGYFNMLRLWRLRRVSAMFARLEKDRNYNYFWVRCSKLICVTLFSVHFAACFFYFLALNRQPSSTWLSLVSDDAQNGLWKRYVTSMYWSIVTLSTVGYGDLHPVNTKEMVFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKYRDTVQAATGFAHRNQLPIRLQEQMLAHLFMKYRTDLEGLQQQEIIESLPKAIRSSISHYLFYPLVDKVYLFHGVSTDLIFQLVTEMRAEYFPPKEDVVLQNEAPTDFYIFVTGAAELIIRKNGMEQVVGEVVSGDVVGEIGVLCYRPQVFTVRTKRLSQILRLNRTTFLNLVHSNIGDGTIVMNNFLQHLQESRYPGMDAILAETEAMLARGKMDMPITTCFAASRNDDLLLHRLLKKGSDPNELDKNGKTALHIAASKGNEHCVTLLLEYGADPNSKDMDGSVPLWEAMKGRHESVMKLLIDNGADISLADAGHLACSAVEQNNMELLKEIIQCGVDVTQPKKNGTTALHTAIFEGNTEMINFLVDQGADIDMQDANGWTPRALVEQHESEEIKNVFQNIRESRKPGVIPISKNDNRSGRFQIDPSMPLLPYHGRRRSTSSFDNSIFGMISTANRDKRDPRAPEGSNTNRGDVNGLTRVTISCPEKGDHAGKLVLLPKSLEELLDIGARKFDISPTKILTIDGAEVDDINLVRDGDHLIIAGLKREERIDS 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00052 874 PRINTS EAG/ELK/ERG potassium channel family signature 260 277 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo10g00052 874 PRINTS EAG/ELK/ERG potassium channel family signature 304 313 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo10g00052 874 PRINTS EAG/ELK/ERG potassium channel family signature 123 132 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo10g00052 874 PRINTS EAG/ELK/ERG potassium channel family signature 89 96 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo10g00052 874 PRINTS EAG/ELK/ERG potassium channel family signature 112 122 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo10g00052 874 PRINTS EAG/ELK/ERG potassium channel family signature 286 297 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo10g00052 874 ProSiteProfiles Ankyrin repeat profile. 570 602 IPR002110 GO:0005515
Pumo10g00052 874 ProSiteProfiles cAMP/cGMP binding motif profile. 392 511 IPR000595 -
Pumo10g00052 874 FunFam Potassium channel KAT2 380 516 - -
Pumo10g00052 874 Pfam KHA, dimerisation domain of potassium ion channel 801 863 IPR021789 -
Pumo10g00052 874 ProSiteProfiles Ankyrin repeat region circular profile. 667 698 - -
Pumo10g00052 874 ProSiteProfiles Ankyrin repeat profile. 603 635 IPR002110 GO:0005515
Pumo10g00052 874 Pfam Cyclic nucleotide-binding domain 412 497 IPR000595 -
Pumo10g00052 874 Gene3D Jelly Rolls 358 517 IPR014710 -
Pumo10g00052 874 SUPERFAMILY cAMP-binding domain-like 317 512 IPR018490 -
Pumo10g00052 874 ProSiteProfiles Ankyrin repeat region circular profile. 603 634 - -
Pumo10g00052 874 Pfam Ion transport protein 77 319 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pumo10g00052 874 CDD CAP_ED 392 497 IPR000595 -
Pumo10g00052 874 ProSiteProfiles Ankyrin repeat profile. 667 699 IPR002110 GO:0005515
Pumo10g00052 874 Gene3D - 539 722 IPR036770 -
Pumo10g00052 874 ProSiteProfiles KHA domain profile. 801 874 IPR021789 -
Pumo10g00052 874 Pfam Ankyrin repeats (3 copies) 639 704 IPR002110 GO:0005515
Pumo10g00052 874 Pfam Ankyrin repeats (3 copies) 544 634 IPR002110 GO:0005515
Pumo10g00052 874 PRINTS Ankyrin repeat signature 571 586 IPR002110 GO:0005515
Pumo10g00052 874 PRINTS Ankyrin repeat signature 619 633 IPR002110 GO:0005515
Pumo10g00052 874 ProSiteProfiles Ankyrin repeat region circular profile. 570 601 - -
Pumo10g00052 874 SUPERFAMILY Voltage-gated potassium channels 71 313 - -
Pumo10g00052 874 SMART ANK_2a 570 599 IPR002110 GO:0005515
Pumo10g00052 874 SMART ANK_2a 537 566 IPR002110 GO:0005515
Pumo10g00052 874 SMART ANK_2a 634 663 IPR002110 GO:0005515
Pumo10g00052 874 SMART ANK_2a 603 632 IPR002110 GO:0005515
Pumo10g00052 874 SMART ANK_2a 667 696 IPR002110 GO:0005515
Pumo10g00052 874 FunFam Potassium channel KAT3 78 314 - -
Pumo10g00052 874 SUPERFAMILY Ankyrin repeat 543 722 IPR036770 -
Pumo10g00052 874 PANTHER POTASSIUM CHANNEL AKT1 39 864 IPR045319 GO:0005249|GO:0006813
Pumo10g00052 874 SMART cnmp_10 392 509 IPR000595 -
Pumo10g00052 874 MobiDBLite consensus disorder prediction 773 797 - -
Pumo10g00052 874 Gene3D - 77 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00052 Pumo-Chr10 1116422 1122928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00052 32 864 Ion Channels AT2G25600 59.860 0.0 1035
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00052 K21867 - gmx:100802964 1503.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00052 10 1116422 1122928 Pumo10g00052 10 1116422 1122928 ECH
Pumo9g00660 9 12404898 12412428 Pumo10g00052 10 1116422 1122928 PCT