LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo10g00052	ATGTCGACGCGTGCGAAGAAGATGTTTGCAAGGTTGTGTGGCAGCCATGACGAGGCTGCGGATGATGAGAGACACAGAGATCGCATAGAGATTGAGCAAATGTCCAATGATGGAAGCCAATACAGCCTCAACGGTATTCCGCTTCCGTCTCTTGGCGCGGCCGGCGCCGGCCGCTCCCAGAGACACAAGCTCCGGAGTTTCATTATCTCGCCGTACAACCCTCGTTACAGATTGTGGGAGACGTTTCTGGTGTTCTTAGTTTTCTACACTGCATGGGTTTGCCCGTTTGAGTTTGGATTCCTTAATAATCCGAAGGATCCTCTTGCCACTACTGACGATGTGGTGAATGGTTTTTTTGCCATTGACATTATTCTGACCTTCTTTGTTGCCTACCTGGACAAGTCTACATATCTGCTGGTGGACCAACCAAAGCTCATTGCCTGGAGATATATCAGAACATGGTTCGCCTTTGATGTCATCTCCACCATCCCTTCTGAACTTGCCCGCAGCGTATTGCCTAAAATTTTTAAGACATATGGCTACTTTAACATGCTCCGTCTTTGGCGTCTCCGTAGAGTTAGTGCCATGTTTGCAAGATTAGAAAAGGACAGAAATTATAACTACTTCTGGGTGCGCTGTTCAAAGCTTATATGTGTTACTCTATTTTCAGTGCATTTTGCTGCCTGCTTTTTCTATTTTCTTGCTTTAAACCGTCAACCAAGTTCAACATGGCTTAGCCTGGTTTCTGATGACGCTCAAAACGGTCTTTGGAAGCGCTATGTAACATCGATGTACTGGTCCATAGTGACTCTTTCCACAGTCGGTTATGGTGACTTGCATCCAGTTAATACCAAGGAGATGGTGTTTGACATATTTTATATGCTCTTTAACCTGGGACTAACGGCATATCTCATCGGAAACATGACAAACTTGGTTGTTCATGGGACAAGCAGAACTAGGAAATATAGAGACACGGTGCAAGCTGCCACAGGTTTTGCCCATCGGAATCAGTTACCTATCCGCTTGCAAGAACAGATGCTTGCTCATTTGTTTATGAAGTACAGAACTGATTTAGAAGGATTGCAGCAACAAGAAATTATTGAATCCCTTCCAAAGGCTATTCGATCTAGCATCTCACACTACCTATTCTATCCACTTGTGGACAAAGTGTACTTGTTTCATGGAGTGTCAACTGACCTAATCTTTCAACTGGTCACGGAGATGAGGGCTGAGTATTTTCCTCCAAAGGAAGATGTGGTTTTGCAGAATGAAGCGCCAACAGACTTTTATATCTTTGTTACTGGTGCTGCAGAACTGATCATTAGAAAGAATGGAATGGAACAGGTCGTTGGTGAGGTAGTGTCAGGAGATGTAGTTGGAGAAATAGGAGTTCTATGTTACAGGCCACAGGTGTTTACAGTTCGAACCAAACGGTTGAGCCAAATTCTGCGCTTGAACCGTACTACATTTCTAAATCTTGTTCATTCAAATATTGGAGATGGAACAATAGTCATGAACAATTTTCTCCAGCATTTGCAAGAATCAAGGTATCCAGGGATGGATGCTATTTTGGCAGAAACGGAGGCCATGCTTGCTCGGGGTAAAATGGACATGCCCATTACCACATGCTTTGCAGCAAGCAGAAATGATGATCTATTGTTGCATCGTTTGCTTAAGAAGGGTTCAGATCCAAATGAATTAGATAAGAATGGAAAGACAGCACTGCATATTGCAGCTTCCAAAGGCAATGAGCATTGTGTAACTTTGCTTCTAGAATATGGTGCTGATCCCAATAGCAAAGATATGGACGGAAGTGTCCCACTATGGGAAGCAATGAAGGGTAGGCATGAGTCGGTGATGAAACTTCTCATAGACAATGGTGCAGACATATCTTTAGCCGATGCAGGCCATCTAGCATGCAGTGCTGTTGAGCAAAATAACATGGAATTGCTCAAGGAAATAATTCAATGTGGTGTGGATGTGACACAACCCAAGAAGAATGGAACCACTGCTCTTCACACTGCAATATTTGAAGGGAACACTGAGATGATTAACTTCCTTGTAGACCAAGGAGCAGACATTGACATGCAAGATGCTAATGGGTGGACTCCCAGGGCTTTGGTAGAACAACACGAGAGCGAAGAAATTAAAAATGTATTCCAGAACATTAGAGAGAGCAGAAAACCAGGTGTTATTCCAATATCAAAGAATGACAACCGGAGTGGGAGGTTTCAAATTGATCCCAGCATGCCACTGCTACCTTATCATGGGAGGAGAAGGTCTACCAGCTCTTTTGATAATTCCATTTTTGGAATGATCTCAACTGCCAACCGTGATAAGAGAGATCCCCGGGCACCTGAAGGCAGTAACACTAATAGAGGGGATGTGAATGGATTAACCAGAGTGACAATTAGTTGTCCTGAAAAAGGTGACCATGCTGGAAAGCTTGTTTTGCTGCCTAAGTCCCTTGAAGAGCTATTAGATATTGGTGCAAGAAAGTTTGATATATCTCCCACCAAAATTTTGACCATAGATGGAGCTGAAGTAGATGATATAAATCTTGTAAGAGATGGTGATCATCTTATTATTGCCGGATTGAAGAGGGAAGAAAGAATTGATTCCTAA	2625	0.4324	MSTRAKKMFARLCGSHDEAADDERHRDRIEIEQMSNDGSQYSLNGIPLPSLGAAGAGRSQRHKLRSFIISPYNPRYRLWETFLVFLVFYTAWVCPFEFGFLNNPKDPLATTDDVVNGFFAIDIILTFFVAYLDKSTYLLVDQPKLIAWRYIRTWFAFDVISTIPSELARSVLPKIFKTYGYFNMLRLWRLRRVSAMFARLEKDRNYNYFWVRCSKLICVTLFSVHFAACFFYFLALNRQPSSTWLSLVSDDAQNGLWKRYVTSMYWSIVTLSTVGYGDLHPVNTKEMVFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKYRDTVQAATGFAHRNQLPIRLQEQMLAHLFMKYRTDLEGLQQQEIIESLPKAIRSSISHYLFYPLVDKVYLFHGVSTDLIFQLVTEMRAEYFPPKEDVVLQNEAPTDFYIFVTGAAELIIRKNGMEQVVGEVVSGDVVGEIGVLCYRPQVFTVRTKRLSQILRLNRTTFLNLVHSNIGDGTIVMNNFLQHLQESRYPGMDAILAETEAMLARGKMDMPITTCFAASRNDDLLLHRLLKKGSDPNELDKNGKTALHIAASKGNEHCVTLLLEYGADPNSKDMDGSVPLWEAMKGRHESVMKLLIDNGADISLADAGHLACSAVEQNNMELLKEIIQCGVDVTQPKKNGTTALHTAIFEGNTEMINFLVDQGADIDMQDANGWTPRALVEQHESEEIKNVFQNIRESRKPGVIPISKNDNRSGRFQIDPSMPLLPYHGRRRSTSSFDNSIFGMISTANRDKRDPRAPEGSNTNRGDVNGLTRVTISCPEKGDHAGKLVLLPKSLEELLDIGARKFDISPTKILTIDGAEVDDINLVRDGDHLIIAGLKREERIDS	874

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pumo10g00052	874	PRINTS	EAG/ELK/ERG potassium channel family signature	260	277	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
Pumo10g00052	874	PRINTS	EAG/ELK/ERG potassium channel family signature	304	313	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
Pumo10g00052	874	PRINTS	EAG/ELK/ERG potassium channel family signature	123	132	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
Pumo10g00052	874	PRINTS	EAG/ELK/ERG potassium channel family signature	89	96	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
Pumo10g00052	874	PRINTS	EAG/ELK/ERG potassium channel family signature	112	122	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
Pumo10g00052	874	PRINTS	EAG/ELK/ERG potassium channel family signature	286	297	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
Pumo10g00052	874	ProSiteProfiles	Ankyrin repeat profile.	570	602	IPR002110	GO:0005515
Pumo10g00052	874	ProSiteProfiles	cAMP/cGMP binding motif profile.	392	511	IPR000595	-
Pumo10g00052	874	FunFam	Potassium channel KAT2	380	516	-	-
Pumo10g00052	874	Pfam	KHA, dimerisation domain of potassium ion channel	801	863	IPR021789	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo10g00052	Pumo-Chr10	1116422	1122928	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo10g00052	32	864	Ion Channels	AT2G25600	59.860	0.0	1035

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo10g00052	K21867		-	gmx:100802964	1503.42

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo10g00052	10	1116422	1122928	Pumo10g00052	10	1116422	1122928	ECH
	Pumo9g00660	9	12404898	12412428	Pumo10g00052	10	1116422	1122928	PCT

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