Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00040 ATGTCTCAGACTAACTGGGAAGCTGACAAGATGTTAGATGTTTACATCCATGATTATCTTGTCAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGAAAAGTATCCTCGGACCCTGTTGCTATTGATGCCCCGGGAGGTTTTCTGTTCGAGTGGTGGTCGGTTTTCTGGGATATATTTATTGCAAGGACTAATGAGAAGCACTCAGAGGTTGCTGCATCGTATATTGAGACACAATTAATAAAGGCAAGGGAGCAACAACAACAGCAGCAGCAACAGCAGCAGCCACAACCCCAGCAGTCACAGCATCAACAACAGCAGCAGCAACAACACTTACAGATGCAACAGCTCCTGATGCAGAGAGCACAGCAGCAACAGCAACAACAGCAGCAACAACAACAGCAGCAGCAGCAACAACAACAACAGCCACAATCGCAGCAACAGCAGTCACAACCACAACAACAGCAAAGTAGGGATAGGGCTCATCTTTTAAATGGTAGTGCAAATGGGTTAGTTGGAAGCCCTGGAACTGCAAATGCACTAGCAACAAAGATGTATGAGGAAAGATTAAAACTTCCCCTTCAAAGGGACTCTTTGGATGATGCAGCAATGAAGCAAAGATTTGGTGAGAACATGGGCCAACTCTTGGACCCGAATCATGCATCGATATTAAAGTCAGCTGCAGCTCCTGGCCAGCCTTCAGGGCAAGTTTTACATGGTGCTGCTGGTGGGATGTCTCCACAAGTTCAAGCACGTACTCAGCAATTACCAGGGTCTACTCTGGATATAAAGGGTGAGATTAGTCCTGTTTTAAATCCTAGAGCTGCGGGTCCTGAAGGATCATTGATGGGAATGCCTGGATCAAATCAAGGTAGCAATAATTTGACTTTGAAAGGGTGGCCACTCACAGGTTTGGAGCAACTGCGCTCTGGTCTACTCCAGCAACAAAAACCTTTCATGCAGGCTCCTCCGCCTTTTCATCAACTCCAAATGTTGACACCACAGCATCAGCAACAGCTTATGCTGGCGCAACAAAATCTGCCGTCACCATCTGCCAGTGATGAAAGTAGAAGACTGAGAATGCTATTGAATAATAGGAGTATTGGTCTAAATAAGGATGGTCTTTCAAATCCTGTTGGTGATGTGGTATCAAATGTTGGATCCCCTCTTCAAGGTGGTGGCCCTTCTTTTCCTCGTGGAGATACAGATATGCTAATGAAGTTGAAGCTGGCTCAGTTACAGCAGCAACAACAGTCAAGTACCAATGCACAGCAGCAGCAGCTTCAACAGCATGCCCTTTCAAACCAGCAATCTCAGACTTCTAATCATAGCATGCATCAGCAAGATAAAGTAGGGGGAGGTGGTGGCAGTGTCACTGTGGATGGTAGCATGTCAAACTCATTTAGAGGAAATGACCAGGTTTCAAAAAACCAGATTGGGAGAAAGAGAAAGCAGCCTGGATCCTCGTCAGGTCCTGCCAATAGTTCAGGAACAGCAAATACAACAGGTCCATCACCTAGTTCAGCACCCTCAACTCCCTCGACTCATACGCCTGGAGATGTGATATCAATGCCTGCCTTGCCTCATAGTGGTAGTTCTTCAAAACCTCTAATGATGTTTGGCACAGATGGCACTGGAACCCTTACGTCACCTTCTAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATGTGGATCGCTTTGTGGAGGATGGATCTCTAGATGAAAATGTGGAGTCTTTTTTGTCCCATGATGACACAGACCCTAGAGATACTGTTGGCCGTTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGATGTAAATTCTGTACGGGCAAGCACAAGCAAAGTTGCTTGTTGCCATTTCTCATCGGATGGGAAATTACTAGCAAGTGGTGGCCATGACAAAAAGGTTGTTTTATGGTACACAGATTCTCTAAAACAAAAAGCTACTCTTGAAGAGCATTCATCTTTGATTACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGTTATTCACTTCGCACCTTCACGGGACATTCTGCATCTGTTATGTCACTAGATTTTCATCCAAATAAAGATGACCTCATCTGCTCTTGTGATGGTGATGGTGAGATACGATATTGGAGCATAAACAATGGCAGTTGTGCCAGAGTCTCCAAGGGTGGCACAACACAGATGAGATTTCAGCCTCGTCTAGGGAGGTACCTTGCTGCAGCAGCAGAGAATATTGTGTCTATATTTGATGTGGAGACACAAGCATGCCGATATTCATTAAAGGGACACACAAAACCGGTGGATTGCGTGTGTTGGGACCCTTCTGGGGAGTTGCTGGCATCTGTGAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGATCAGGAAGTGAGGGGGAATGTGTTCATGAACTTAGCTGTAATGGCAATAAGTTTCATGCAAGTGTTTTCCACCCAACGTACCCTTCATTGCTGGTCATTGGCTGTTACCAGTCATTGGAGCTGTGGAACATGGGCGAGAGAAAGACAGTGACTCTCCCTGCTCATGATTATATCACTGGCTTGGCTGTTTCAACTGGAAATGGTTTTGTTGCTTCTGCCAGTCATGACAAGTTCATCAAGCTCTGGAAGTGA 2700 0.4567 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQPQPQQSQHQQQQQQQHLQMQQLLMQRAQQQQQQQQQQQQQQQQQQQQPQSQQQQSQPQQQQSRDRAHLLNGSANGLVGSPGTANALATKMYEERLKLPLQRDSLDDAAMKQRFGENMGQLLDPNHASILKSAAAPGQPSGQVLHGAAGGMSPQVQARTQQLPGSTLDIKGEISPVLNPRAAGPEGSLMGMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPPPFHQLQMLTPQHQQQLMLAQQNLPSPSASDESRRLRMLLNNRSIGLNKDGLSNPVGDVVSNVGSPLQGGGPSFPRGDTDMLMKLKLAQLQQQQQSSTNAQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTVDGSMSNSFRGNDQVSKNQIGRKRKQPGSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFGTDGTGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVACCHFSSDGKLLASGGHDKKVVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSKGGTTQMRFQPRLGRYLAAAAENIVSIFDVETQACRYSLKGHTKPVDCVCWDPSGELLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHASVFHPTYPSLLVIGCYQSLELWNMGERKTVTLPAHDYITGLAVSTGNGFVASASHDKFIKLWK 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00040 899 ProSitePatterns Trp-Asp (WD) repeats signature. 677 691 IPR019775 -
Pumo10g00040 899 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 658 693 - -
Pumo10g00040 899 Pfam WD domain, G-beta repeat 697 734 IPR001680 GO:0005515
Pumo10g00040 899 Pfam WD domain, G-beta repeat 618 647 IPR001680 GO:0005515
Pumo10g00040 899 Pfam WD domain, G-beta repeat 779 813 IPR001680 GO:0005515
Pumo10g00040 899 Pfam WD domain, G-beta repeat 865 899 IPR001680 GO:0005515
Pumo10g00040 899 Pfam WD domain, G-beta repeat 655 690 IPR001680 GO:0005515
Pumo10g00040 899 ProSiteProfiles Trp-Asp (WD) repeats profile. 874 899 IPR001680 GO:0005515
Pumo10g00040 899 MobiDBLite consensus disorder prediction 415 451 - -
Pumo10g00040 899 MobiDBLite consensus disorder prediction 90 111 - -
Pumo10g00040 899 SUPERFAMILY WD40 repeat-like 614 899 IPR036322 GO:0005515
Pumo10g00040 899 MobiDBLite consensus disorder prediction 415 541 - -
Pumo10g00040 899 Gene3D - 760 899 IPR015943 GO:0005515
Pumo10g00040 899 ProSiteProfiles Trp-Asp (WD) repeats profile. 616 657 IPR001680 GO:0005515
Pumo10g00040 899 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 899 - -
Pumo10g00040 899 PRINTS G protein beta WD-40 repeat signature 635 649 IPR020472 -
Pumo10g00040 899 PRINTS G protein beta WD-40 repeat signature 677 691 IPR020472 -
Pumo10g00040 899 PRINTS G protein beta WD-40 repeat signature 886 899 IPR020472 -
Pumo10g00040 899 SMART Lish 8 40 IPR006594 GO:0005515
Pumo10g00040 899 MobiDBLite consensus disorder prediction 462 522 - -
Pumo10g00040 899 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 616 647 - -
Pumo10g00040 899 SMART WD40_4 820 859 IPR001680 GO:0005515
Pumo10g00040 899 SMART WD40_4 737 773 IPR001680 GO:0005515
Pumo10g00040 899 SMART WD40_4 694 734 IPR001680 GO:0005515
Pumo10g00040 899 SMART WD40_4 651 690 IPR001680 GO:0005515
Pumo10g00040 899 SMART WD40_4 776 814 IPR001680 GO:0005515
Pumo10g00040 899 SMART WD40_4 609 648 IPR001680 GO:0005515
Pumo10g00040 899 SMART WD40_4 861 899 IPR001680 GO:0005515
Pumo10g00040 899 ProSiteProfiles Trp-Asp (WD) repeats profile. 701 743 IPR001680 GO:0005515
Pumo10g00040 899 ProSiteProfiles Trp-Asp (WD) repeats profile. 783 823 IPR001680 GO:0005515
Pumo10g00040 899 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 701 739 - -
Pumo10g00040 899 Coils Coil 115 145 - -
Pumo10g00040 899 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Pumo10g00040 899 Pfam LisH 10 36 IPR006594 GO:0005515
Pumo10g00040 899 FunFam Transcriptional corepressor LEUNIG 595 749 - -
Pumo10g00040 899 ProSiteProfiles Trp-Asp (WD) repeats profile. 658 693 IPR001680 GO:0005515
Pumo10g00040 899 CDD WD40 616 899 - -
Pumo10g00040 899 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 867 899 - -
Pumo10g00040 899 Gene3D - 602 759 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00040 Pumo-Chr10 981967 998945 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00040 661 860 Miscellaneous Gene Families AT5G08390 25.604 1.43e-14 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Pumo10g00040 WD40 5e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00040 - - gmx:100816263 1335.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00040 10 981967 998945 Pumo10g00040 10 981967 998945 ECH
Pumo9g00674 9 12787386 12800422 Pumo10g00040 10 981967 998945 PCT