Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00031 ATGGCGGTGCTGCTGAGAATGGCTCAGCCTCACAATGCCAACACCAACAACACTGCGAACCAGCAATTGGTCCTTCATGACTTTCTGGGTATGAAGCCCGCCGCCGATTCCCCCAAAACCGCCGATGTCAGGATACCGGAGCCCTCCGCCTCCGCCTCCTCCGCCGGCGGACGTGCCCTCTTCTCCGCCACCTCTGACATCGCTTCCGAGAAACAGGTAGGAAATCATCTCGAGGGAGTTCCATTCTACGGCCCAAGGAGTGATTTTTCTGGCACTGAGATAAGTAACAGATTAGTGGGAAACAAGAGAAGTAATTCTGATTCCACTTTTATGGGTTCCTCCAGAGATGCTTTCCAAATGGTCCCTGATTCCTTTCAAAACTCACATTTGATGAAGGTTCTCCGGAATGCGGCTGGAGGAGAGAGGTCTAGAAGGCCCAATGATGATGAAGTGTTACTTGGTATGCAGTCAATGAAGCCATCTTCTTCTCAGATATTTCAGCCTCCCACCAGCACTAAGATTGATGCCAATAAATGGGAACGATCTATTCTCATGAATGTTGGCCCTTCCATGCAGCATCCACCACGTGGAGGGCAATTGGCACCTTTTGTGCACCAAATGGCTTCAAGCAAGATGAGGGATACCAATGCTGGCCCTTCATTCATCTCTCAGTCAGCTGCTGATGAAGGATCTAGAACTGGAATCAAGGGCCCTGGAATTTTAAGTTCTATAAACACAGCTGCTACAGCCACTGAGAAAACTCCATCTGCAGTGATGCTTGGTAGCAGCAGGCCAAAGCCTGGAACTAATATAATAGAATCATCCACACCACCAAGCAGTCAACACGGGCTAACTTCTGCCAGCCGCCAGATGACTATTTTTTACGGAGGCCAAGCTCATGTTTTTGATGATGTCCACCCCCATAAGGCAGATGTTATAATGGCTTTAGCTGGGTCAAATGGAGGATCTTGGTCCACTGCATTCTCGCCTAAATCTGCTGTAAAGATGGTTAATGATGGTAACTTGCATAGCGGAGAAAATGAAACAGGTGTAGTGAGTAATGTGGCATTCCCACAGGAGCTTCATGGGAAATTGTCTATTACTGGCAGTTCTAGCCATGCCATCGGACCTGGTGATCGAGTAACTACTCCGGCAGGGGCACACCAAGGAAGCATTTTTGTGAAAGATACAAGAAATCCGGTCCAACCACCAGATCCCAGTTCTGAAGACAAAAGAGCACAGTGA 1245 0.4851 MAVLLRMAQPHNANTNNTANQQLVLHDFLGMKPAADSPKTADVRIPEPSASASSAGGRALFSATSDIASEKQVGNHLEGVPFYGPRSDFSGTEISNRLVGNKRSNSDSTFMGSSRDAFQMVPDSFQNSHLMKVLRNAAGGERSRRPNDDEVLLGMQSMKPSSSQIFQPPTSTKIDANKWERSILMNVGPSMQHPPRGGQLAPFVHQMASSKMRDTNAGPSFISQSAADEGSRTGIKGPGILSSINTAATATEKTPSAVMLGSSRPKPGTNIIESSTPPSSQHGLTSASRQMTIFYGGQAHVFDDVHPHKADVIMALAGSNGGSWSTAFSPKSAVKMVNDGNLHSGENETGVVSNVAFPQELHGKLSITGSSSHAIGPGDRVTTPAGAHQGSIFVKDTRNPVQPPDPSSEDKRAQ 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00031 414 MobiDBLite consensus disorder prediction 36 57 - -
Pumo10g00031 414 MobiDBLite consensus disorder prediction 368 414 - -
Pumo10g00031 414 ProSiteProfiles Tify domain profile. 284 319 IPR010399 -
Pumo10g00031 414 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 89 353 IPR040390 -
Pumo10g00031 414 Pfam tify domain 286 318 IPR010399 -
Pumo10g00031 414 SMART tify_2 284 319 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00031 Pumo-Chr10 886965 893945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00031 18 317 Tify Gene Family AT4G32570 41.772 7.60e-59 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Pumo10g00031 tify 2.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00031 - - gmx:100819293 754.592