Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00029 ATGCCCCTGACATATACAGCAATATTCGAGTCAGCAGAGTCTTATAATGCTGAAAAAAATGAAGGGATACTTCCACTACAAAAAATATTGACGGTGAGTTTTGGTGAATCACTCCAGCTTCAAAGGAAACCAGTGACCAACTACATGGATAAGTTGCAGAAAGATATTAATCCAAGCATGCGCGGAATTCTGGTTGATTGGCTTGTGGAGGTTTCTGAGGAGTACAAGTTGGTTCCAGACACTCTTTATCTGACAGTGAACCTCATTGATCGGTATCTCTCAACAAGGCTCATTCAAAAGCAAAGGCTCCAGTTGCTCGGTGTTACTTGCATGCTGATTGCATCAAAATATGAAGAGATGTGTGCACCTCGAGTGGAGGAATTTTGCTTCATCACAGATAATACATACACAAAAGAAGAGGTATTGAAAATGGAGAGAGAAGTACTAAATCTTATGCATTTTCAATTATCTGTTCCCACAATCAAAACTTTTCTCAGGAGATTCATCCAAGCAGCACAATCTTCTTACAAGGCTCCTTGTGTTGAACTGGAATTCCTGGCAAATTATTTAGCAGAGCTTGCTCTGGTTGAATACAGCTTCTTCCAGTTTCTACCTTCCCTTGTAGCTGCATCTGCTGTGTTCCTAGCCAGTTGGACCCTGAACGACTCAGAACATCCATGGAATCCAACTCTGGCGCACTATACAAAATACAAATCTTCAGATCTCAAAACTGTTGTTCTTGCACTGCAAGATCTGCAGCTTAATACCAAAGGCTGTTCACTGAATGCTGTCCGCGAGAAGTATAAACAACAGAAGTTCAATTGTGTGGCAAACTTGTCTCCAAAACCGGTGCAGTCACTCTTCCAGGCCCAAGTGTAA 879 0.4175 MPLTYTAIFESAESYNAEKNEGILPLQKILTVSFGESLQLQRKPVTNYMDKLQKDINPSMRGILVDWLVEVSEEYKLVPDTLYLTVNLIDRYLSTRLIQKQRLQLLGVTCMLIASKYEEMCAPRVEEFCFITDNTYTKEEVLKMEREVLNLMHFQLSVPTIKTFLRRFIQAAQSSYKAPCVELEFLANYLAELALVEYSFFQFLPSLVAASAVFLASWTLNDSEHPWNPTLAHYTKYKSSDLKTVVLALQDLQLNTKGCSLNAVREKYKQQKFNCVANLSPKPVQSLFQAQV 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00029 292 CDD CYCLIN_AtCycA-like_rpt2 159 273 - -
Pumo10g00029 292 ProSitePatterns Cyclins signature. 61 92 IPR006671 -
Pumo10g00029 292 Pfam Cyclin, N-terminal domain 37 156 IPR006671 -
Pumo10g00029 292 PIRSF Cyclin_A_B_D_E 34 291 IPR046965 GO:0016538|GO:0044772
Pumo10g00029 292 SMART Cyclin_C_2 159 282 IPR004367 -
Pumo10g00029 292 SUPERFAMILY Cyclin-like 38 156 IPR036915 -
Pumo10g00029 292 FunFam Cyclin A1 146 278 - -
Pumo10g00029 292 FunFam Mitotic cyclin 6 44 144 - -
Pumo10g00029 292 Pfam Cyclin, C-terminal domain 159 281 IPR004367 -
Pumo10g00029 292 Gene3D - 37 278 - -
Pumo10g00029 292 SUPERFAMILY Cyclin-like 158 281 IPR036915 -
Pumo10g00029 292 PANTHER CYCLINS 40 274 IPR039361 -
Pumo10g00029 292 Gene3D - 44 157 - -
Pumo10g00029 292 SMART cyclin_7 66 150 IPR013763 -
Pumo10g00029 292 SMART cyclin_7 163 251 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00029 Pumo-Chr10 862727 866063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00029 39 288 Core Cell Cycle Gene Families AT5G25380 68.127 9.13e-127 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00029 K06627 - gmx:547780 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00029 10 862727 866063 Pumo10g00029 10 862727 866063 ECH
Pumo9g00680 9 12923035 12930003 Pumo10g00029 10 862727 866063 PCT