Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00021 ATGCACACCAAATCGGCCCAGTCATCGTTTCGGGATCGGACGCACGAGTTCCAGAGCATTGCGGACAGGTTGAAGAAGACAGGATCAGCGCCAAATGGACAAAGCAGCAGCACTTCATCCAGATCGGAGGAACAGCGATCCGCAATTGCAAATCAATCCGAGTTCAATAGAAGAGCTTCCAAGATCGGATTCGGGATTCACCAAACGTCTCAGAAACTCGCCAAGCTCGCCAAGTTGGCTAAGAGGACTTCGGTTTTTGACGACCCTACCATGGAAATCCAAGAGCTTACGGGGGTTATTAAGCAAGATATTACTGCTTTAAACTCTGCGGTTGTGGATCTTCAGTTACTCTGCAACTCTAGGAATGAGAGTGGGAACGCTTCTACCGACACCACTAGCCATTCAACCACGGTTGTGGATGACTTGAAGACGCGGTTGATGAGCACCACCAAAGAGTTTAAAGATGTTCTCACCATGCGAACTGAGAACTTGAAAGTGCATGAGAATAGAAGACAGCTGTTTTCAGCCTCTGGTTCTAAGGATTCTGCAAATCCTTTTGTTCGGCAGCGGCCATTGGCTACAAGGTCGGCTGCTAGCACTTCTGATGCCCCCGCTCCACCATGGGCTACCGGGTCATCTTCATCTCAGTTGTTTCCTAAGAAGCAGGTGGATGGGGAGAGTCAACCATTGCTGCACCAGCAGCAGCAGCAGCAAGAGGTAGTTCCATTGCAAGACAGTTACATGCAAAGCAGAGCTGAAGCGCTTCAAAATGTTGAGTCCACTATTCATGAGCTCAGCAACATCTTTAATCAACTAGCAACACTTGTTTCCCAACAAGGAGAGATTGCCATCAGATTGACCCTAAGCCCATACCTGCCCTATCCCATAGCAGGCTTTAAACTCACCATACCCACCCCATGCAGGGTGGGACAAGTTGGGTACTCATGGGTTAGGGTTTGTTAG 963 0.4901 MHTKSAQSSFRDRTHEFQSIADRLKKTGSAPNGQSSSTSSRSEEQRSAIANQSEFNRRASKIGFGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTGVIKQDITALNSAVVDLQLLCNSRNESGNASTDTTSHSTTVVDDLKTRLMSTTKEFKDVLTMRTENLKVHENRRQLFSASGSKDSANPFVRQRPLATRSAASTSDAPAPPWATGSSSSQLFPKKQVDGESQPLLHQQQQQQEVVPLQDSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEIAIRLTLSPYLPYPIAGFKLTIPTPCRVGQVGYSWVRVC 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00021 320 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 245 282 IPR000727 -
Pumo10g00021 320 MobiDBLite consensus disorder prediction 192 233 - -
Pumo10g00021 320 Gene3D - 47 286 - -
Pumo10g00021 320 MobiDBLite consensus disorder prediction 1 49 - -
Pumo10g00021 320 MobiDBLite consensus disorder prediction 193 233 - -
Pumo10g00021 320 MobiDBLite consensus disorder prediction 1 22 - -
Pumo10g00021 320 SUPERFAMILY t-snare proteins 52 283 IPR010989 GO:0016020|GO:0016192
Pumo10g00021 320 PANTHER SYNTAXIN 48 285 IPR045242 -
Pumo10g00021 320 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 7 27 IPR021538 -
Pumo10g00021 320 MobiDBLite consensus disorder prediction 28 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00021 Pumo-Chr10 777775 781188 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00021 1 286 SNARE and Associated Proteins AT3G24350 60.443 1.62e-110 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00021 K08490 - gmx:100777961 479.944