Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00020 ATGCACGCGAAATCGGCGCAGTCATCGTTCCGGGATCGGACGCAGGAATTCCACAGCATCACAGAGAGGTTGAAGAAGTCCGGATCAGGGCCCAATGGGCCCAGCAGTAGCAGTTCTTCCAGATCGGAGGAACAGCGATCCGCGATCGCGAACCAATCAGAGTTCAATAGAAGGGCCTCCAAAATCGGCTACGGGATTCACCAAACGTCTCAGAAGCTCGCCAAGCTCGCCAAGTTGGCGAAAAGGACTTCGGTTTTTGATGACCCTACTATGGAAATCCAAGAGCTTACGGGGGTTATTAAGCAGGATATTACTGCTCTGAACTCTGCGGTTGTGGATCTTCAGTTGCTTTGTAACTCTAGGAATGAGAGTGGGAATGTTTCTGCCGACACGACTAGCCATTCGAGCACTGTGGTGGATGACTTGAAGACAAGGTTGATGAGCACCACCAAAGAGTTTAAGGATGTTCTCACCATGAGAACTGAGAACATGAAAGTGCATGAGAATAGAAGACAGTTGTTTTCATCTTCTGCTACTAAGGATTCTGCAAATCCTTTCATCCGGCAACGGCCGTTGGCTGCAAGGGCAGCTGCTAGTACTTCTAATGCCCCTGCTCCTCCGTGGGCTAATGGGTCACCATCTTCGTCTCAGGCGCTTTCTAAGAAGCAAGTGGATGGGGAGAGTCAACCATTGTTGCAGCAACAACAGCAGCAGCAGGAGGTAGTTCCATTGCAAGACAGTTACATGCAAAGCAGAGCTGAAGCACTTCAGAATGTTGAGTCCACTATTCATGAGCTTAGCAACATTTTCAATCAGCTAGCGACACTTGTTTCCCAACAAGGAGAGATTGCCATCAGGATTGATGAAAACATGGATGATACATTGGCAAACGTAGAGGGAGCACAAGGGGCTTTGTTGAAGTATCTGAACAGCATATCTTCTAATCGAGTTTAA 954 0.4822 MHAKSAQSSFRDRTQEFHSITERLKKSGSGPNGPSSSSSSRSEEQRSAIANQSEFNRRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTGVIKQDITALNSAVVDLQLLCNSRNESGNVSADTTSHSSTVVDDLKTRLMSTTKEFKDVLTMRTENMKVHENRRQLFSSSATKDSANPFIRQRPLAARAAASTSNAPAPPWANGSPSSSQALSKKQVDGESQPLLQQQQQQQEVVPLQDSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEIAIRIDENMDDTLANVEGAQGALLKYLNSISSNRV 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00020 317 SMART tSNARE_6 241 308 IPR000727 -
Pumo10g00020 317 MobiDBLite consensus disorder prediction 1 54 - -
Pumo10g00020 317 ProSitePatterns Syntaxin / epimorphin family signature. 252 291 IPR006012 GO:0005484|GO:0006886|GO:0016020
Pumo10g00020 317 MobiDBLite consensus disorder prediction 203 242 - -
Pumo10g00020 317 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 246 308 IPR000727 -
Pumo10g00020 317 MobiDBLite consensus disorder prediction 193 242 - -
Pumo10g00020 317 PANTHER SYNTAXIN 48 314 IPR045242 -
Pumo10g00020 317 SUPERFAMILY t-snare proteins 52 301 IPR010989 GO:0016020|GO:0016192
Pumo10g00020 317 CDD SNARE_syntaxin5 249 316 - -
Pumo10g00020 317 Gene3D - 49 301 - -
Pumo10g00020 317 MobiDBLite consensus disorder prediction 1 23 - -
Pumo10g00020 317 MobiDBLite consensus disorder prediction 25 54 - -
Pumo10g00020 317 Pfam SNARE domain 282 316 IPR000727 -
Pumo10g00020 317 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 7 26 IPR021538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00020 Pumo-Chr10 772673 776499 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00020 1 316 SNARE and Associated Proteins AT3G24350 63.768 1.63e-132 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00020 K08490 - gmx:100811494 520.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00020 10 772673 776499 Pumo10g00020 10 772673 776499 ECH