Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00009 ATGTCGCTGATGGAGGATCAAGCGAATCAAGCACCACCGCCGCGGGATGAAGAGGAGGATTCTAAGAAGGAAGAAGAGGAATTGATTACAAAGGTTAACAAACTCATGGAGAAGATCACTTCTGCACCTGATAACCCTAACGCCACCGTTCTTCACGCCCTTGCCTCTATTCTTGAAGCGCAAGAGTCACGATACATGGAAGAGAGTGGTCATTCTTCCTCCAGCACTGCACGTGCTGCACATATCATTGGTCGCCTTGGCGGTTTAATACGGGAAAATGACGAGTTCTTTGAGTTGATATCTTCAAAGTTTCTGTTAGAAACAAGATACTCGACTTCCATTCAAGCTGCTGCTGGCAGACTTCTCCTATGCTGTTCCCTCACTTGGATTTATCCTCATGTTTTTGAAGAATCTGTCATGGAAAACATAAAAAATTGGGTGATGGATGATAACACTGGGTTGCCTGCTGAAGAGCAGAATCTGAAGCATAATCCAGGGAGTAGGGAGGCCTCTGACTCTGAAATGTTGAAAACATATTCTACTGGACTCCTTGCTGTGTGTTTGATCGGTGGAGGTCAAATAGTGGAAGATGTATTGACATCTGGCTTGTCAGCTAAGCTTATGCGTTATCTTCGTTTACGCGTGCTGGGAGAGACAAGTGGCAACCAGAAAGATGTTACTCATATAACGGAGAGTAGGCATGCATCTGCGAATACTTCAGGGAGAAGTAGAGATGATGGTCGTGGTAGATTTCGCCAGCTCCTTGAATCAAATCATTTAGATGATACTAGGATGATTGATGAGAGATCTTTAGATGACGTAACTCTTGAAAGGGGTCCGGATAGAAGCATTAGTGGACAAACTTGCCAAGAAGGATCTTGGATAGATGGTGAACCACCCGATGGGCTTGGTGAAGGTGCCAATGATGTGGATTCTGATGGGGAGGATAGATGGTGCTGTAGAGATATTCGTGATGGAAGGATAAAATATGGTGAGCACGACGACAATATTAGAGATGACTCTTCAAGGCGGCGTGCAAACCGTGGATGGGGAAGATCTAGAGGGAAAGGAAGGGTCAATGAAGGGGCTGTAGAAAGTGATCCCATTTTGTCATCTCCTGGATCTGGTAGTCGATTAGGACAGGGGAGGAGTGTTAGAGATAGAAACATATCGAGGAATGCTGACATTAGGAGGGTGGCTGATTCTAAGAAGAACCTTGGCAGGACCCCTTCTGAGGCTTCTGCTTTTGAAAGAGAGGATAATGATGATTGTTTCCAAGAGTGCCGAATTGGGAATAAAGATATTACTGATCTTGTCCGAAAAGCAGTCCGAGCTGCTGAAGCTGAAGCTAGATCAGCCAATGCACCTGAAGAAGCAGTCAAAGCAGCTGGTGATGCTGCCGCTGACCTTGTTAAAACTGCAGCTTCTGAGGAATATAAATCCACTAATGATGAAGAAGCAGCTTTTTTGGCTGCTTCAAGAGCTGTATCAACTGTTATTGATGCTGCATCTGCAGTTGAAGTTTCAAGGAGTTCTATCTGCGACAATACTGTGACAGAGAATTTGAGGGAAAAATATTGCATTCAGTGTCTTGAGTTACTTGGAGAATATGTAGAAGTCCTTGGCCCTGTGTTGCACGAGAAGGGGGTTGATGTGTGTCTTGCACTTCTGCAGCAGAATTCTAAACATCGGGAGGCATCCAAGGTTGCTTTGCTGTTGCCTGATGTCATGAAGCTAATCTGTGCTTTGGCTGCACATAGGAAATTTGCTGCACTATTTGTGGACCGTGGGGGAATGCAAAAGCTGCTTGCTGTGCCTAGAATGCCACAAACTTTCTTTGGCCTTTCTTCTTGTCTATTTACTATTGGTTCTCTTCAGGGGATAATGGAACGGGTTTGTGCTCTTCCATCTCAAGTTGTTTATCATGTTGTTGAGTTAGCTCTCCAACTCCTTGACTGCAATCAAGACCAAGCCCGGAAGAATGCAGCATTGTTTTTTGCTGCTGCATTTGTCTTCAGAGCAGTTCTTGATGCCTTTGATTCCCTGGATGGATTACAGAAATTACTGGGCCTTCTAAATGATGCTGCTTCAGTAAGATCAGGAGTAAATTCTGGAGCCTTGAGTTTATCTAACTCAGGATCACTTCGAAATGATCGATCGTCTGCAGAAGTGCTGACATCATCTGAGAAGCAGATAGCCTATCACACTTGTGTTGCTTTGCGGCAATATTTCAGGGCACATCTCCTTGTATTAGTAGATTCCATTCGTCCAAATAAAAGCAATCGTAGTGCTGCCAGAAATATTCCGAGTGTAAGGGCTGTGTACAAGCCGCTCGATATTAGTAACGAGGCAGTGGATGCAGTATTCCTACAATTACAAAAAGATAGGAAGTTAGGTCCTGCATTTGTGAGAACACGTTGGCTAGCAGTTGAGAAGTTCTTGGCATCTAATGGACATATTACTATGTTGGAATTGTGTCAGGCCCCACCTGTGGAGCGATATCTGCATGATTTGCTTCAGTATGCATTGGGTGTTTTGCACATTGTTACATTGGTACCTAGCAGTCGTAAGATGATTGTGAATGTAACATTAAGCAATAATCGTGTTGGTATTGCGGTAATTTTGGATGCTGCAAATATAGCTAGTAATCATGTGGACCCTGAGATAATTCAACCGGCATTAAATGTTTTAGTCAATCTTGTGTGCCCTCCTCCTTCAATCAGCAATAAACCAGCTATGGTTGCACAAGGTCAGCAGTTGGCATCTTCCCAAACATCTAATGGTCCTCCCTCAGAGGCTAGAGATAGAAATGCTGAACGTAATGTCTCAGATCGAGCTGTTCACTCTACCAGCCAGATTGATCCTAGGGAAAGGAATGGGGAGTCCAATGCTGTAGATCGAGGCAGTGTTGCAGGATTAAATACACAGCCTGCTAATAGTACACCACAAACTCCTGTTGCTTCTGCAACTTCAGGATTGGTTGGCGACCGAAGAATATCTTTGGGTGCAGGAGCAGGTTGTGCTGGCCTTGCTGCACAATTGGAACAAGGATATCGTCAGGCAAGAGAGGTTGTCCGTTCTAATAATGGTATAAAGGTTCTTCTGCATCTCCTCCAACCGCGCATATATTCACCTCCTGCTGCTCTGGACTGTCTTCGTGCTCTAGCATGTCGAGTCCTGCTTGGATTAGCCAGAGATGATACTATTGCACACATATTGACAAAGCTTCAGGTTGGGAAAAAGCTTTCAGAGCTGATTCGGGATTCAGGCAGCCAAACACTTGGAACAGAGCAGGGTAGGTGGCAAGCTGAACTTTCCCAGGCTGCAATTGAGCTAATTGGGGTGAGCATTTCCTCTCTGGTGAAGCTGAAGGATCGTCAATTTGTTTACAGTCGGTTTAGGCCGTGGCGTACTTGTCGGGATGATGCTGGTGCCTTGTTAACATGCATTACATTTGTTGGGGACTCTTCTCATATTGCTGTTGGAAGCCATAATGGGGAGCTCAAATTTTTTGACTCCAACAACAGCAATGTGGTGGAGAGCTTCACAGGTCACCAGTCTCCTTTGACTCTTGTTCAGTCTTTTGTTTCTGGTGAGACCCAGCTATTACTTTCATCAAGCTCGCAAGATGTCAGGTTGTGGGATGCAACATCAATTTTAGGTGGTCCTAGCCATTCATTTGAAGGATGCAAGGCTGCCAGGTTTAGCAATTCTGGAAATGTTTTTGCAGCCTTGTCATCAGAATCTGTACGGCGGGAAATCCTCTTATATGATATCCAAACATGTCAGTTAGAGTCAAAGTTGTCAGATACATTTGCAGCTTCTACAGGTCGAGGTCATGTTTATTCGTTAATCCATTTTAACCCTTCTGATTCAATGCTGCTTTGGAATGGTGTCTTATGGGATCGGCGGGTTTCTGGGCCTGTTCATCGCTTTGATCAGTTTACAGATTATGGTGGTGGAGGCTTTCATCCTGCTGGTAACGAGGTTATTATAAACTCTGAAGTCTGGGATCTGCGCAAGTTCAGACTGCTACGCAGTGTACCTTCATTAGATCAAACATCAATAACATTCAATGCACGTGGTGATGTAATGTATGCAATCTTAAGGAGAAATCTTGAGGATGTAATGTCAGCAGTCCACACTCGTCGCGTCAAGCATCCTCTTTTTGCAGCTTTCCGCACAGTGGATGCGATAAATTATTCTGATATTGCAACTATCCCTGTGGATCGCTGTGTTCTTGATTTTGCAACTGAGCCAACAGATTCATTTGTTGGGCTGATTACTATGGATGATCAAGATGAGATGTATGCTTCTGCCAGAATCTATGAAATTGGTCGTCGGAGGCCAACTGATGATGATTCTGATCCTGATGATGCTGAAAGTGAGGAAGAAGACGAGGACGATGATGATGACGATCCTGATGTTGATCCTCTGTTGGGCCCTGGTCTTGGTGGGGATAGTGGGAGTGATGCTGATGACATGAGCAATGACGACGATGATGATGATAGTGTGAGCGAGCTGGATGAAGATGAAGATGGAGATTTCATTTTGGATGACGTAGACTTTGATGGAGGACCTGGCATATTGGAGATTGTGACAGAAGGTGATGAGGACGATGATGATAGTCAGGTACTTGAATCCCTAAGTAGTAGTGACGATGAGGATTTTGTGGGTAATGGCTTTGGTTATTAA 4695 0.4454 MSLMEDQANQAPPPRDEEEDSKKEEEELITKVNKLMEKITSAPDNPNATVLHALASILEAQESRYMEESGHSSSSTARAAHIIGRLGGLIRENDEFFELISSKFLLETRYSTSIQAAAGRLLLCCSLTWIYPHVFEESVMENIKNWVMDDNTGLPAEEQNLKHNPGSREASDSEMLKTYSTGLLAVCLIGGGQIVEDVLTSGLSAKLMRYLRLRVLGETSGNQKDVTHITESRHASANTSGRSRDDGRGRFRQLLESNHLDDTRMIDERSLDDVTLERGPDRSISGQTCQEGSWIDGEPPDGLGEGANDVDSDGEDRWCCRDIRDGRIKYGEHDDNIRDDSSRRRANRGWGRSRGKGRVNEGAVESDPILSSPGSGSRLGQGRSVRDRNISRNADIRRVADSKKNLGRTPSEASAFEREDNDDCFQECRIGNKDITDLVRKAVRAAEAEARSANAPEEAVKAAGDAAADLVKTAASEEYKSTNDEEAAFLAASRAVSTVIDAASAVEVSRSSICDNTVTENLREKYCIQCLELLGEYVEVLGPVLHEKGVDVCLALLQQNSKHREASKVALLLPDVMKLICALAAHRKFAALFVDRGGMQKLLAVPRMPQTFFGLSSCLFTIGSLQGIMERVCALPSQVVYHVVELALQLLDCNQDQARKNAALFFAAAFVFRAVLDAFDSLDGLQKLLGLLNDAASVRSGVNSGALSLSNSGSLRNDRSSAEVLTSSEKQIAYHTCVALRQYFRAHLLVLVDSIRPNKSNRSAARNIPSVRAVYKPLDISNEAVDAVFLQLQKDRKLGPAFVRTRWLAVEKFLASNGHITMLELCQAPPVERYLHDLLQYALGVLHIVTLVPSSRKMIVNVTLSNNRVGIAVILDAANIASNHVDPEIIQPALNVLVNLVCPPPSISNKPAMVAQGQQLASSQTSNGPPSEARDRNAERNVSDRAVHSTSQIDPRERNGESNAVDRGSVAGLNTQPANSTPQTPVASATSGLVGDRRISLGAGAGCAGLAAQLEQGYRQAREVVRSNNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDTIAHILTKLQVGKKLSELIRDSGSQTLGTEQGRWQAELSQAAIELIGVSISSLVKLKDRQFVYSRFRPWRTCRDDAGALLTCITFVGDSSHIAVGSHNGELKFFDSNNSNVVESFTGHQSPLTLVQSFVSGETQLLLSSSSQDVRLWDATSILGGPSHSFEGCKAARFSNSGNVFAALSSESVRREILLYDIQTCQLESKLSDTFAASTGRGHVYSLIHFNPSDSMLLWNGVLWDRRVSGPVHRFDQFTDYGGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQTSITFNARGDVMYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATEPTDSFVGLITMDDQDEMYASARIYEIGRRRPTDDDSDPDDAESEEEDEDDDDDDPDVDPLLGPGLGGDSGSDADDMSNDDDDDDSVSELDEDEDGDFILDDVDFDGGPGILEIVTEGDEDDDDSQVLESLSSSDDEDFVGNGFGY 1564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00009 1564 SMART WD40_4 1175 1215 IPR001680 GO:0005515
Pumo10g00009 1564 SMART WD40_4 1220 1258 IPR001680 GO:0005515
Pumo10g00009 1564 SMART WD40_4 1132 1172 IPR001680 GO:0005515
Pumo10g00009 1564 MobiDBLite consensus disorder prediction 1443 1564 - -
Pumo10g00009 1564 MobiDBLite consensus disorder prediction 388 405 - -
Pumo10g00009 1564 FunFam DDB1-and CUL4-associated factor homolog 1 1130 1457 - -
Pumo10g00009 1564 MobiDBLite consensus disorder prediction 1533 1549 - -
Pumo10g00009 1564 MobiDBLite consensus disorder prediction 1 27 - -
Pumo10g00009 1564 MobiDBLite consensus disorder prediction 331 347 - -
Pumo10g00009 1564 MobiDBLite consensus disorder prediction 1492 1520 - -
Pumo10g00009 1564 MobiDBLite consensus disorder prediction 222 249 - -
Pumo10g00009 1564 MobiDBLite consensus disorder prediction 331 418 - -
Pumo10g00009 1564 Gene3D - 1133 1457 IPR015943 GO:0005515
Pumo10g00009 1564 MobiDBLite consensus disorder prediction 271 316 - -
Pumo10g00009 1564 MobiDBLite consensus disorder prediction 222 237 - -
Pumo10g00009 1564 MobiDBLite consensus disorder prediction 370 387 - -
Pumo10g00009 1564 PANTHER VPRBP PROTEIN-RELATED 1124 1562 IPR033270 GO:0016567
Pumo10g00009 1564 MobiDBLite consensus disorder prediction 11 27 - -
Pumo10g00009 1564 SUPERFAMILY WD40 repeat-like 1132 1364 IPR036322 GO:0005515
Pumo10g00009 1564 Coils Coil 15 38 - -
Pumo10g00009 1564 MobiDBLite consensus disorder prediction 1456 1477 - -
Pumo10g00009 1564 MobiDBLite consensus disorder prediction 968 990 - -
Pumo10g00009 1564 MobiDBLite consensus disorder prediction 911 932 - -
Pumo10g00009 1564 MobiDBLite consensus disorder prediction 911 991 - -
Pumo10g00009 1564 SUPERFAMILY ARM repeat 546 1090 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00009 Pumo-Chr10 600583 609682 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00009 1159 1365 U-box Gene Family AT2G33340 25.446 2.26e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00009 K11789 - gmx:100796030 1865.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00009 10 600583 609682 Pumo10g00009 10 600583 609682 ECH