Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo109g00014 ATGGGAACTGATAGCGGTGAACTGGTAGAGACATTACCAAATCCTCGCTCCTTTAAGGTACATCGTACAATGTGCACAGAACTCCGGAAATTAGTTGATAGAATCTTGCGGATAATTCCACAGATAGAAGCAGCACGCCCTTGTGGAATGCAGGCGCTGTGTTTGCTGAACAAGGCAATTGATAAAGCCAAACAACTCCTGCTATACTGCTCCGAATCTAGTAAACTCTACCTGGCAATAACAGGGGATTCCATACTCTTAAAATCCCAGAAGGCAAGAAAATCGTTAGCGAAAAGCTTAGTCCAGATTCAAAATATGGTTCCGGTTATGTTGGCTGCAGAGATTTCTCGACTAATTGGTGATCTTGAGTGTGTGACATTTGTCCTCAACTCTGCTGAAGAAGCAGCTGGGAAGGTTGTGAAACAATTGCTCCAGCCAGATCCTTCAACATCAGATAAAGATTCAATGGAGGAATCTGAGATAAAAGATTTTCAGTTTGTAGCAGCAAGACTTGGTATTACATCCCCGAAGGCTATCTTAATAGAGAGACGATCTATTCAGAAGTTGCTAGAAAAAGTCAAACCAAATGACCAGAACAAAGAGATTGTCTTGAAAAATCTTTTGTTTCTCCTGGTAAAGCACCGAAAATCAATCACAGGGGAACAAATGGAGGTCTATTCTCAAAGTGAAGGACCAATCACAACTGAGAACTCAGGTCATGAGTCTCAAAAAATCCTTCATGTCAAGTCAGACCCATACTTGAACCATGGTCAGTATAGAACTCATGCTAGTGAGTTGGGTAGACTTACACCTCCAGAGGAATATACATGCTCAATATCTTTAAGGTTGATGTATGACCCTGTTGTCATTGCTTCAGGAAAAACATATGAAAGGATGTGGATACAAAAATGGTTTGATGAGGGTAATACTACATGCCCAAAAACTAAAGAGAAACTGGTTCATATGGCATTGACTCCAAACGTTGCCTTAAAGGACTTAATATTAAAGTGGTGCGAAACTAATGGAATCTCCATTCCTGACCCGAGTAGGCAAGCGCAAGATTTGCACTTATGGGATGCTTCCTCCAATTCCATTAGGAGTTTTGGAAGTTCTTTGTATGATTTGAACTTCCCAACAGATTTTAGTAACATGTCTCTTGGATCATTAGATACCAGTTATAATTCAGATTCCTCCCACACTAAGGCCAATCATAGCTTAAATTTGATGTTGAACAAGAGCAGTGACAATTCTCGCAGGCATCAATCTCGTGCACAGATACATGACGCTGATCTGATGCATTTGTCTAAACTCCATGAGCGTCAATGGGAATCTCAATGCCAAGTCATTGAAGATATGAAAATAGATTTCAGATGCAATTACCAAGCTTATTGCACTGTGTCACCTGAGAATTTCATTGACCCATTCACGAGATTTCTGAGCACTGCTTGTGAGAGGCATGATGTAAAAGCTCTGAGAGTGGGAACTAAGTTGCTATTGGAATTTATGAAGTGCTGCAGAAATGGGATGACCAATTTAAGTGAAGATACATGCATTATGTTGGCAAGTCTTCTTGACACAGAAGTGATTGGTGAAGCTCTCGCCATAATGGAAGAACTGACAAGGAATAGGTATGAAAAAGCTAATGTTTCAGCTTCCAGTGTACTCACTTCTGTTTCAAAGATCCTTGATTCAGGTAATGAAGAGTTCCAACGAAAAGCTATTAAAATAATGTATAATTTTTCATCCAATGTTCAAATTTGTCCCTACATGGTATCTCTCGGGTGCATCCCAAAATTGCTGCCATTTTTTGAAGACAGAACCCTTTTGAGAGACTGTATACACATTTTGAAAAACCTTTGTGATACTAAAGAGGGTAGGGTTACTGTTGTTGAAACAAAAGGATGCATATCTTCTGTTGTTGAAATACTTGGGTCTGGCAGTGATGAGGAAAAAGAACCTGCACTGGATATTCTTCTCTCTTTATGCTCTCAACGTGTGGAATACTGTCAGTTGGTTATGCATGAGGGGATTATTCCTTCTCTTGTCAACATCTCCAATAAAGGAAGTGATATGGCAAAGGCTTATGCATTGGAACTACTCCGTCTTTTGAAGGACAATAACGAGTTTGAGTATGAAGATTGTTGTGAGCCAAATCTCAGTGCCTCTCAAGAACCTAACAATCACTATCAAGAAAAGAAATCATCAAAGAAACTGTCGATTTTGAAGAAACTGTCACTCTTCTCAAAATCCAGTTCAGTTACACCAAAAAACAAGAGATGA 2280 0.3965 MGTDSGELVETLPNPRSFKVHRTMCTELRKLVDRILRIIPQIEAARPCGMQALCLLNKAIDKAKQLLLYCSESSKLYLAITGDSILLKSQKARKSLAKSLVQIQNMVPVMLAAEISRLIGDLECVTFVLNSAEEAAGKVVKQLLQPDPSTSDKDSMEESEIKDFQFVAARLGITSPKAILIERRSIQKLLEKVKPNDQNKEIVLKNLLFLLVKHRKSITGEQMEVYSQSEGPITTENSGHESQKILHVKSDPYLNHGQYRTHASELGRLTPPEEYTCSISLRLMYDPVVIASGKTYERMWIQKWFDEGNTTCPKTKEKLVHMALTPNVALKDLILKWCETNGISIPDPSRQAQDLHLWDASSNSIRSFGSSLYDLNFPTDFSNMSLGSLDTSYNSDSSHTKANHSLNLMLNKSSDNSRRHQSRAQIHDADLMHLSKLHERQWESQCQVIEDMKIDFRCNYQAYCTVSPENFIDPFTRFLSTACERHDVKALRVGTKLLLEFMKCCRNGMTNLSEDTCIMLASLLDTEVIGEALAIMEELTRNRYEKANVSASSVLTSVSKILDSGNEEFQRKAIKIMYNFSSNVQICPYMVSLGCIPKLLPFFEDRTLLRDCIHILKNLCDTKEGRVTVVETKGCISSVVEILGSGSDEEKEPALDILLSLCSQRVEYCQLVMHEGIIPSLVNISNKGSDMAKAYALELLRLLKDNNEFEYEDCCEPNLSASQEPNNHYQEKKSSKKLSILKKLSLFSKSSSVTPKNKR 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo109g00014 759 SUPERFAMILY ARM repeat 521 709 IPR016024 -
Pumo109g00014 759 SMART arm_5 583 621 IPR000225 GO:0005515
Pumo109g00014 759 SMART arm_5 622 663 IPR000225 GO:0005515
Pumo109g00014 759 SMART arm_5 665 705 IPR000225 GO:0005515
Pumo109g00014 759 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
Pumo109g00014 759 SUPERFAMILY RING/U-box 264 348 - -
Pumo109g00014 759 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 344 IPR013083 -
Pumo109g00014 759 PANTHER U BOX DOMAIN-CONTAINING 23 708 - -
Pumo109g00014 759 CDD RING-Ubox_PUB 272 321 IPR045210 -
Pumo109g00014 759 Pfam U-box domain 272 341 IPR003613 GO:0004842|GO:0016567
Pumo109g00014 759 Gene3D - 514 716 IPR011989 -
Pumo109g00014 759 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
Pumo109g00014 759 FunFam RING-type E3 ubiquitin transferase 270 342 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo109g00014 15 703 U-box Gene Family AT4G36550 38.604 1.31e-140 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo109g00014 - - gmx:100798951 1333.55