Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo109g00009 ATGGACATGAGAGAGCAAGATAAGGTAATAGAGATGCCTAGCACTTTGGGTTATAACCAGCTCCCAAATAGAAATTCCTCTTCTTCCAAGCTATCATCACCAATAGGGGAAAGAAGTGACCTACCTCCTCAATCATCTCACACATTAGTTTTCAGTGATCCACCACCCCAATCTTCATCACATCATCAACATCACCATAATCTCTATCCCCCTTCTCTCCCACCAAACCCTCTTCAACTTCCACAACCTCACAGACCCAGAAGAGATCCAGATCCAAGTCATCCTATTTCTCCTCCAATTACAAGCACACCAAGAACAGCACCACACACAACAGGAACTTCCACAACAACATTCAGATACCGAGAATGTCTGAAGAATCATGCTGCAAGCATGGGGGGCCGTGTCACTGATGGGTGTGGAGAGTTCATGCCAAATGGAGAAGAGGGCACCCCAGAATCCTTCAAGTGTGCAGCTTGTGAGTGCCACCGCAATTTCCACAGAAAAGAACCTGAAGGAGATAACTCACAACAACATGTTCTCAACTACCACCACCACCACCTCCCTTATTACCCCAACAAAAACAATAGGAACATTATCATTCATTCTCCACCACAATCTCATCACCACCTTCATGGGGTGGTGGCTGCTACCCCTACCCCTTCAGGTGGGCCTGTTCAGCCCGTGATGCTGGGCTTTGGGGGAGGCCCAGCTGAGTCCTCAAGCGAAGATCTCAACATGTTTCAGACCAATGATGGAGGAGGGAACTTGTTAGTGCAGCCACCACTGTCTTCATCCAACAAGAAGAGGTTCAGGACCAAGTTCACACAGCAACAAAAAGATATGATGATGGAGTTTGCTGAGAAACTGGGGTGGAAGATCCAGAAGCAAGATGAACAGGAACTGCATCACTTTTGCTCTCAGGTTGGTGTAAAAAGACAGGTTTTCAAGGTTTGGATGCACAACAGCAAGCAAGCCATGAAGAAGAAGCAAATGTAA 996 0.4679 MDMREQDKVIEMPSTLGYNQLPNRNSSSSKLSSPIGERSDLPPQSSHTLVFSDPPPQSSSHHQHHHNLYPPSLPPNPLQLPQPHRPRRDPDPSHPISPPITSTPRTAPHTTGTSTTTFRYRECLKNHAASMGGRVTDGCGEFMPNGEEGTPESFKCAACECHRNFHRKEPEGDNSQQHVLNYHHHHLPYYPNKNNRNIIIHSPPQSHHHLHGVVAATPTPSGGPVQPVMLGFGGGPAESSSEDLNMFQTNDGGGNLLVQPPLSSSNKKRFRTKFTQQQKDMMMEFAEKLGWKIQKQDEQELHHFCSQVGVKRQVFKVWMHNSKQAMKKKQM 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo109g00009 331 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 97 324 - -
Pumo109g00009 331 MobiDBLite consensus disorder prediction 103 118 - -
Pumo109g00009 331 Pfam ZF-HD protein dimerisation region 118 170 IPR006456 -
Pumo109g00009 331 MobiDBLite consensus disorder prediction 1 118 - -
Pumo109g00009 331 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 119 169 IPR006456 -
Pumo109g00009 331 NCBIfam homeobox domain, ZF-HD class 267 324 IPR006455 -
Pumo109g00009 331 MobiDBLite consensus disorder prediction 16 66 - -
Pumo109g00009 331 FunFam Zinc-finger homeodomain protein 2 258 328 - -
Pumo109g00009 331 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 120 169 IPR006456 -
Pumo109g00009 331 SUPERFAMILY Homeodomain-like 257 328 IPR009057 -
Pumo109g00009 331 Gene3D - 259 328 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo109g00009 93 331 ZF-HD Transcription Factor Family AT2G18350 47.177 6.59e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pumo109g00009 ZF-HD_dimer 2.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo109g00009 - - ccaj:109810490 412.92