LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo109g00005	ATGATGCACCGTTGTTGTTGCGGAGGAGGAGGCGGGTCTCAGGGGCACGTGATGGGCACGTGCACATGCGAAACCAGCTCTTACTCGATGCTCTTTTCTATGCCCAACGCCCACGGTGGTGGTGGTGGTGGTGGTGGTCCCTATGATGATTACGAACACCACATGTACTCTTCTTCCTCCGTGGACTGCACGCTCTCCCTCGGAACACCCTCCACGCGTTTAACGCAGGACGAGGATAAACGACACCGCCACGATCGTCGTTCTTCCGTCACCAATTTTTGCCGGGACTTGCTGCAATCCAAACACAACGCGCAATCTCATCAAAGCAAGGCTAGCAGCAGAGGAGGCAATAGTGGTAATTCCAACAACAACGACCCTCTCCTCGCTCGTCGCTGCGCCAACTGCGACACCACTTCCACTCCCCTTTGGAGAAACGGTCCTCGTGGCCCAAAGTCACTATGCAATGCTTGCGGGATCAGATTCAAGAAGGAAGAGAGAAGAGCGAGCGCCGCCGCCGCCACGTCAGCGGCGGTTCCAGGCGGCGTCATGGAATCGGCGCGCGTGTACGGCCACCACAACAATTCGTGGTACGCACACTCGCAGAGCCAGAAGATGATGGGCAACGAGTTACGCTTCATGGACGATTCTGACGACAGAGACTCGTCGGAGAACGGCATTCCGTTCCTCTCTTGGAAACTCAACGTTCCAGATCGAACGAGCTTCGTTCACGACTTCACAAGATGA	744	0.5605	MMHRCCCGGGGGSQGHVMGTCTCETSSYSMLFSMPNAHGGGGGGGGPYDDYEHHMYSSSSVDCTLSLGTPSTRLTQDEDKRHRHDRRSSVTNFCRDLLQSKHNAQSHQSKASSRGGNSGNSNNNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAATSAAVPGGVMESARVYGHHNNSWYAHSQSQKMMGNELRFMDDSDDRDSSENGIPFLSWKLNVPDRTSFVHDFTR	247

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo109g00005	247	Pfam	GATA zinc finger	132	166	IPR000679	GO:0006355\|GO:0043565
	Pumo109g00005	247	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	129	168	-	-
	Pumo109g00005	247	Gene3D	-	128	204	IPR013088	GO:0006355\|GO:0008270
	Pumo109g00005	247	PANTHER	GATA TRANSCRIPTION FACTOR 18	15	247	IPR044272	GO:0003700\|GO:0009908
	Pumo109g00005	247	MobiDBLite	consensus disorder prediction	101	126	-	-
	Pumo109g00005	247	ProSiteProfiles	GATA-type zinc finger domain profile.	126	162	IPR000679	GO:0006355\|GO:0043565
	Pumo109g00005	247	MobiDBLite	consensus disorder prediction	74	89	-	-
	Pumo109g00005	247	CDD	ZnF_GATA	131	163	IPR000679	GO:0006355\|GO:0043565
	Pumo109g00005	247	SMART	GATA_3	126	179	IPR000679	GO:0006355\|GO:0043565
	Pumo109g00005	247	ProSitePatterns	GATA-type zinc finger domain.	132	157	IPR000679	GO:0006355\|GO:0043565
	Pumo109g00005	247	MobiDBLite	consensus disorder prediction	67	89	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo109g00005	27	247	C2C2-Gata Transcription Factor Family	AT3G50870	48.120	4.69e-61	192

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-GATA	Pumo109g00005		GATA	6e-18	CL0167

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo109g00005	-		-	gmx:100799154	308.916