Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo108g00002 ATGCCGACTTTTAAGGAAAACATTTATTATGAGGAATATCGAGTGTCATTTGTAGCTGAGGAAAGAATGACGGAGGAAGTTCCCGGGATTGGAGAAGCTGCTGAGCCTCCAGCTTCATCTCAATCACCTGCTGATGTGCCACATAATATGGAAACAGAACAAATGACTCATACAAAGTATTCTATTACCAGTAGGAATGGGGTTGGGACCACAGGAAAACACATACCTTTACTTGTGAATCTCTTCAAAGTTGCTGTTAATGCTCCAGACACAGTGTTTTTCCAGTATAGTGTTGCTATTACTTTTGAAGATAAACGAGCTGTTGAAAGCAAGGGCATTGGGAGAAAAGTGATTGATAGGCTTTACCAAACATACTCTTCTGAACTTGGTGGCAAAAGGTTTGTATACGATGGAGGGAAAACTTTGTATACAGTGGGTCCTCTGCCACTAAATAAGTATGAGTTCAAAGTGTTGCTGGAGAAATCATTTACAAAATGCAGTAGTGCCGAGAGTCCTGGTGCTAACGGAAGCCTTCATGAGGAAACTAAAAGGTCAAAATATTCTTTTCAGTCAAAGACATTCATGGTGGAGATAAGTTTTGCTACTAAAATACCCCTACAGTCCATTGCTATTGCCCTCAAAGAGGTTGAGTTGGATGCCAATTCTCAAGATGCTTTGAGAGTGCTTGATACTGTACTGAGGCAGCGTGCAGCTAACTGTGGGTGTCTCTTGGTAAGGCAATCTTTTTTTCATGATGACTCAAGAAATTTCACCGATGTTGGGGCTGGTGTAACAGCAGTCTCGGGTTTTCATTCCAGTTTTCGTCCCACGCAGCAAGGATTGTCTCTCAATATGGACGTGTCAACAACGATGATCATAAAACCTGGATCTGTAATTGATTTTCTGTTATCAAATCAGCAAGTGAAGGAACCCCGTTATATTGACTGGGAAAAGGCCAAAAAAATGCTTAAAAATTTAAGGGTGCAAGCAACTCATCGTAACCAGGAATTTAAAATTTCTGGGTTGAGTGAGAAACCATGCATTCAGCAACTTTTTAGTATGAAGGTTAAAAATGATAACGACAATAGCGGAGGGCAGACAGTGGATATCACTGTATATGAATATTTTGCCAAACACTGTGGCATAGAGCTGACCTCATCTGCTTATCTTCCATGTCTTGATGTTGGGAAACCAAAACGGCCCATCTATCTTCCCTTGGAGCTATGTTCACTTGTTTCCCTCCAACGGTATACAAAGGTATTAGCTCCGATGCAAAGAGCATCTTTAGTTGAAAAATCACGCCAAAAGCCTGAAGATAGAATCAAAATTCTGAAAAATGCTGTAGGAAATTATTGCTACAATGATGATCCTGTTCTTGCTGCATGTGGCATTTCTATTGAGAAACAATTGACTCCGGTTGAAGGTCGTGTTCTTGAGACACCAAAGTTGAAGGTTGGTAAGAATGATGATTGCATCCCCCATAATGGAAGGTGGAATTTTAATAAGAAGACACTTCTACAACCATCACATATTGATTATTGGGCTGTTGTCAACTTTTCTGCAAGTTGTGATACTAGTTACATATCAAGGGAGCTGATCAGATGTGGAATGAGCAAGGGCATTAACATTGAACGACCATATACTTTGATAGAGGAGGAACCACAGTTGAGAAAATCTAACCCTGTTGCAAGGGTTGAAAGAATGTTTGACCTGCTTGCATCAAAACTAAATAGAGAACCAACGTTGATTCTCTGTGTCTTGCCAGAAAGGAAAAATTGTGACATATATGGGCCATGGAAAAAGAAGTGTCTGAGTGAAATTGGTGTTGTCACACAGTGCATTTCCCCGGTCAAGATCACTGATCAATACCTTACCAATGTACTTCTTAAAATCAATTCTAAGCTTGGAGGAATAAATTCTCTGTTGGCAATAGAGCATTCTGGGCATCTTCCCCTGATTAAAGATACCCCAACAATGATTTTGGGGATGGATGTCTCTCACAGTTCGCTTGGTCGATTAGATAGTCCATCAATAGCAGCTGTTGTTGGATCTCGACGTTGGCCACTGATTTCAAGGTATAGAGCATCTGTGAGAATGCAGGCATCCAAGGTGGAGATGATTGATGCTCTATATAATCCATTGGAAAATGGGAGTGATGATGGTATTATCAGAGAATTGCTTTTAGATTTCTATGAATCAAGTAATGGACGCAAGCCAACTCAATTTATTGTCTTCAGGGATGGAGTTAGTGAATCACAATTTAAACAAGTTTTGACTATCGAGCTTAACCAGATAATCAAGGCCTATCAACATCTTGGTGAGGTTAATGTTCCCAAGTTCACTCTGATTGTGGCACAGAAAAATCATCATACTAAGCTGTTTCTGCCTAAGGGTCCAGAAAATGTTCCTCCTGGGACAGTAGTGGACACAACAATCACACATCCAAGAAATTATGATTTTTACATGTGTGCTCATGCAGGGACGATTGGAACATCTAGGCCAGTACATTATCATGTGCTGCTTGATGAGATCGGTTTCTCGGCCGATGGCTTACAAAATTTGATCCATTCGCTGTCCTATGTGTATGCATTCTACCTTCTGTTTACACAATTGGCACCCATATGCTATGCTCACCATGCTGCAGCTCAGATGGGGCAACTTTTGAATTTTGATGATTTATCAGTAACAGCTTCAAGTCCTGCTTCAGAGGGAAGCATCCCCATACCAGAGCTTCCAAGGTTGCATAAAAATGTCAGGAGTTCCATGTTCTTCTGTTGA 2778 0.4071 MPTFKENIYYEEYRVSFVAEERMTEEVPGIGEAAEPPASSQSPADVPHNMETEQMTHTKYSITSRNGVGTTGKHIPLLVNLFKVAVNAPDTVFFQYSVAITFEDKRAVESKGIGRKVIDRLYQTYSSELGGKRFVYDGGKTLYTVGPLPLNKYEFKVLLEKSFTKCSSAESPGANGSLHEETKRSKYSFQSKTFMVEISFATKIPLQSIAIALKEVELDANSQDALRVLDTVLRQRAANCGCLLVRQSFFHDDSRNFTDVGAGVTAVSGFHSSFRPTQQGLSLNMDVSTTMIIKPGSVIDFLLSNQQVKEPRYIDWEKAKKMLKNLRVQATHRNQEFKISGLSEKPCIQQLFSMKVKNDNDNSGGQTVDITVYEYFAKHCGIELTSSAYLPCLDVGKPKRPIYLPLELCSLVSLQRYTKVLAPMQRASLVEKSRQKPEDRIKILKNAVGNYCYNDDPVLAACGISIEKQLTPVEGRVLETPKLKVGKNDDCIPHNGRWNFNKKTLLQPSHIDYWAVVNFSASCDTSYISRELIRCGMSKGINIERPYTLIEEEPQLRKSNPVARVERMFDLLASKLNREPTLILCVLPERKNCDIYGPWKKKCLSEIGVVTQCISPVKITDQYLTNVLLKINSKLGGINSLLAIEHSGHLPLIKDTPTMILGMDVSHSSLGRLDSPSIAAVVGSRRWPLISRYRASVRMQASKVEMIDALYNPLENGSDDGIIRELLLDFYESSNGRKPTQFIVFRDGVSESQFKQVLTIELNQIIKAYQHLGEVNVPKFTLIVAQKNHHTKLFLPKGPENVPPGTVVDTTITHPRNYDFYMCAHAGTIGTSRPVHYHVLLDEIGFSADGLQNLIHSLSYVYAFYLLFTQLAPICYAHHAAAQMGQLLNFDDLSVTASSPASEGSIPIPELPRLHKNVRSSMFFC 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo108g00002 925 ProSiteProfiles PAZ domain profile. 320 413 IPR003100 GO:0005515
Pumo108g00002 925 ProSiteProfiles Piwi domain profile. 582 889 IPR003165 GO:0003676
Pumo108g00002 925 Gene3D paz domain 289 417 - -
Pumo108g00002 925 Gene3D - 649 925 IPR036397 GO:0003676
Pumo108g00002 925 CDD PAZ_argonaute_like 295 412 - -
Pumo108g00002 925 FunFam Protein argonaute 7 290 417 - -
Pumo108g00002 925 Pfam N-terminal domain of argonaute 73 233 IPR032474 -
Pumo108g00002 925 Pfam Piwi domain 582 888 IPR003165 GO:0003676
Pumo108g00002 925 Pfam Argonaute linker 2 domain 442 484 IPR032472 -
Pumo108g00002 925 SMART Piwi_a_2 582 889 IPR003165 GO:0003676
Pumo108g00002 925 SMART DUF1785_2 243 295 IPR014811 -
Pumo108g00002 925 CDD Piwi_ago-like 457 883 IPR045246 -
Pumo108g00002 925 Gene3D - 477 643 - -
Pumo108g00002 925 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 54 890 - -
Pumo108g00002 925 SUPERFAMILY PAZ domain 290 453 IPR036085 GO:0005515
Pumo108g00002 925 SMART PAZ_2_a_3 296 430 IPR003100 GO:0005515
Pumo108g00002 925 Pfam PAZ domain 299 429 IPR003100 GO:0005515
Pumo108g00002 925 SUPERFAMILY Ribonuclease H-like 566 889 IPR012337 -
Pumo108g00002 925 FunFam Protein argonaute 3 650 925 - -
Pumo108g00002 925 Pfam Argonaute linker 1 domain 245 294 IPR014811 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo108g00002 46 925 Eukaryotic Initiation Factors Gene Family AT5G43810 34.853 3.79e-154 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo108g00002 K11593 - gmx:100778875 1664.43