Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g01558 ATGAGTTCTAGGTTTTCTGGAAAGGTCAAGTGGTTCGATGCCCAGAAGGGTTATGGTTTCATTACGCCAGATGATGGAGGTGAAGAGGTCTTTGTTCACCAGTCCTCTATACGAACAGAGGGTTTCCGTAGCCTGGGTGAAGGTGAGCCCGTCGAGTTTGTGATCGAATCGGACCCTTCCGGTCGGTCTAAGGCCACCGATGTTACTGGCCCAGATGGGTCCCAGGTTCAAGGAAGTCGCCGTGGTAGTGGCCCAGATGGTGGGGGTGGGTATGGAGGAGGTAGGGGTGGACGTGGTGGGTATGGCGGTGGAAGAGGTGGCGGAGGGGGAGGTGGGTACAGTGGGGGTGGTGGTTATGGCGGAGGTGGTTATGGCGGGGGCGGTTATGGTGGCGGGGGCGGTTATGGAGGCAGCGGTGATTCGGGTTGTTTCAAGTGTGGTGAATCTGGACACATGGCTAGGGACTGCTCCCAAAGTGGCGGAGGCGGAGGAGGAGGCGGAAGGTATGGAAGTGGCGGCGGCGGCGGAGGCGGCGGGAGTGGACAATGCTATAATTGTGGTGGGTATGGGCATTTTGCTAGAGAATGCACCGGTAACTCTCGTTGA 606 0.5809 MSSRFSGKVKWFDAQKGYGFITPDDGGEEVFVHQSSIRTEGFRSLGEGEPVEFVIESDPSGRSKATDVTGPDGSQVQGSRRGSGPDGGGGYGGGRGGRGGYGGGRGGGGGGGYSGGGGYGGGGYGGGGYGGGGGYGGSGDSGCFKCGESGHMARDCSQSGGGGGGGGRYGSGGGGGGGGSGQCYNCGGYGHFARECTGNSR* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g01558 201 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676
Pte9g01558 201 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Pte9g01558 201 SMART csp_8 6 71 IPR011129 GO:0003676
Pte9g01558 201 Gene3D - 1 83 IPR012340 -
Pte9g01558 201 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Pte9g01558 201 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Pte9g01558 201 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Pte9g01558 201 MobiDBLite consensus disorder prediction 62 81 - -
Pte9g01558 201 ProSiteProfiles Zinc finger CCHC-type profile. 183 196 IPR001878 GO:0003676|GO:0008270
Pte9g01558 201 Pfam Zinc knuckle 182 197 IPR001878 GO:0003676|GO:0008270
Pte9g01558 201 Pfam Zinc knuckle 142 158 IPR001878 GO:0003676|GO:0008270
Pte9g01558 201 Gene3D - 177 201 - -
Pte9g01558 201 Gene3D - 138 165 - -
Pte9g01558 201 SUPERFAMILY Retrovirus zinc finger-like domains 164 197 IPR036875 GO:0003676|GO:0008270
Pte9g01558 201 SMART c2hcfinal6 142 158 IPR001878 GO:0003676|GO:0008270
Pte9g01558 201 SMART c2hcfinal6 182 198 IPR001878 GO:0003676|GO:0008270
Pte9g01558 201 MobiDBLite consensus disorder prediction 55 96 - -
Pte9g01558 201 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Pte9g01558 201 PANTHER COLD SHOCK DOMAIN PROTEIN 2 113 198 - -
Pte9g01558 201 MobiDBLite consensus disorder prediction 157 177 - -
Pte9g01558 201 CDD CSP_CDS 7 70 IPR002059 GO:0003676
Pte9g01558 201 ProSiteProfiles Zinc finger CCHC-type profile. 143 158 IPR001878 GO:0003676|GO:0008270
Pte9g01558 201 SUPERFAMILY Retrovirus zinc finger-like domains 135 160 IPR036875 GO:0003676|GO:0008270
Pte9g01558 201 SUPERFAMILY Nucleic acid-binding proteins 3 70 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g01558 Pte-Chr9 36584551 36585912 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Pte9g01558 CSD 1e-24 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g01558 - - mnt:21407697 158.688