Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g01543 ATGAAGATCCAGTGTGATGTCTGTGACAAACAGGAGGCCTCTGTCTTCTGTCCTGCTGATGAAGCTGCACTCTGCCATGGCTGTGATCAGAGTATTCACCATGCCAACAAGCTGGCCAGCAAACACAAACGCTTCTCACTTCTCAACCCTACTTACAAAGAATCCCCACTTTGTGATATCTGTCAAGAAAGGCGTGCTTTTTTGTTTTGCAGAGAAGATAGAGCAATATTATGTAGAGAATGTGATATTCCAATCCATAAAGCCACTGAGCACACACAGAAACATAACAGGTTTCTTCTCACGGGTGTCAAGCTCTCTGGTTGTTCTTCTAAATATCTAACTTCACCTTCCTGTAGCGGAGGACATACAGTGACTGATGTCCAAGTACAGCGGTCAAACTCATCAGCAAACAGAAGGAAATCGATCTCCAATGAAGTGTTCAGTTTACCTTCAATGGTGAATTCTGTAGCATCAGCTGGTTGTAGGATTGAAGATATGATTGTCAGTGATACTGCTTCAGTTTCAACAAGCAGCATATCTGAGTACTTGATTGAAACTTTACCGGGTTGGTGCGTTGAAGACCTCCTCGACCCTCCATTGGAATCTCACGGTCTCTGTAAGAACAATAAATATCAGGCAACATTTGAAGATGAATGCTCTGAAAGCTGTACATTTTCATTTCGATCAGACAACTTAACCTGTTGGGTACCTCAGCTTCAACCTCAATCTTCTAAGATTAGCTCAGAGATGATTCCTGTGAATGGTTTTCTCAAAGGAGCTATGGAGGAAGCACAGAAACCAACAGCTGCCAAGAATAGCTGGAGTTGGTTAGATGATGGTTTCACTGTCCCTCAAATGAGACATTTCTGA 870 0.4276 MKIQCDVCDKQEASVFCPADEAALCHGCDQSIHHANKLASKHKRFSLLNPTYKESPLCDICQERRAFLFCREDRAILCRECDIPIHKATEHTQKHNRFLLTGVKLSGCSSKYLTSPSCSGGHTVTDVQVQRSNSSANRRKSISNEVFSLPSMVNSVASAGCRIEDMIVSDTASVSTSSISEYLIETLPGWCVEDLLDPPLESHGLCKNNKYQATFEDECSESCTFSFRSDNLTCWVPQLQPQSSKISSEMIPVNGFLKGAMEEAQKPTAAKNSWSWLDDGFTVPQMRHF* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g01543 289 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Pte9g01543 289 CDD Bbox1_BBX-like 5 47 - -
Pte9g01543 289 Gene3D Classic Zinc Finger 1 97 - -
Pte9g01543 289 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 286 - -
Pte9g01543 289 SMART bboxneu5 53 100 IPR000315 GO:0008270
Pte9g01543 289 SMART bboxneu5 4 47 IPR000315 GO:0008270
Pte9g01543 289 CDD Bbox1_BBX-like 57 100 - -
Pte9g01543 289 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270
Pte9g01543 289 FunFam B-box zinc finger protein 21 1 98 - -
Pte9g01543 289 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g01543 Pte-Chr9 36507791 36509230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g01543 1 286 C2C2-CO-like Transcription Factor Family AT1G75540 44.785 4.17e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pte9g01543 zf-B_box 6.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g01543 - - qsa:O6P43_002026 335.109