Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g01539 ATGGAGGGCGTGGTTGCAAGAGCCTTGAAACCAAGTTTACGCAGAGAATTTGCGGTCATGAAATCTTCCACCCAGCAAGTGCTTTACGAAGAATTATTGTCTTTCAACGCTAATAATGGCGTTCCGTGTGAGGATTTCTCTGTTGACGACTTGCTTGACTTCTCTAATGGTGAATTCTCTGTAGTTCGTGGTGGACATAACACTGATCAAGTTGACGATGAGGAGGAAGAAAAAGACAGCCTATTCTCTTCTACTTCTTCGCAGGACCATGTAGAAGATGACAGCAACTCTAACAGCTCTGGTTTTTCTGGTACCAACGAGTCTGACTCCATTTTTGCATGCGGACTTGCAGTTCCAACTGATGATTTAGCAGAACTGGAGTGGGTTTCTCAATTTGTGGATGACTGTGCACCAGAGCTTTCGCTTTTGTACCCAGTAACCATTTCTGAGCAAACTACAAAGACCGGTATGAGTGCTAGTACGCCAGGAAAGAGACGGTCTGAAGTACCGAAAGCTCGACCGGACTTAACCCAAGTTTTTGGTTTTTCTTCACGGATGCCGGTCAAACCGAGAACCAAACGTCAAAGATCAAACGGGTCCCGGGCTTGGTCATTAGAGTCGTTTTCACGAACAGGCTTATCGGCCTTGCCATCTTCATGTTCTTCCGGGTTTTCATCGATGCCTTGTCTCATGTTCACCAAAACGGTTCAGAACATGGACTTATTGAACCGGGTCAGCGAACCGCCGGTTAAGAAGCAGAAGAAAAAACCGGAGAATGGTCAACTCGGAGGCTCAATAAGTGGGGGTGGGTCTCAAGTCCAGCGTCGGTGTAGTCATTGCCAAGTGCAGAAGACCCCACAATGGCGAGCCGGCCCGCTCGGTCCTAAGACCCTTTGTAACGCTTGCGGAGTTCGTTTCAAATCCGGGCGGCTATTTCCGGAATACAGGCCGGCCTGTAGTCCTACATTCTCAAGTGAAATTCATTCGAATAGCCATCGTAAGGTGCTAGAGATAAGGAAAAATAAGGAGACGGCTGGACCGGAGCCGGGTTTAGCCCAAGCACAGATGATTATTCCAAGTTGA 1083 0.4792 MEGVVARALKPSLRREFAVMKSSTQQVLYEELLSFNANNGVPCEDFSVDDLLDFSNGEFSVVRGGHNTDQVDDEEEEKDSLFSSTSSQDHVEDDSNSNSSGFSGTNESDSIFACGLAVPTDDLAELEWVSQFVDDCAPELSLLYPVTISEQTTKTGMSASTPGKRRSEVPKARPDLTQVFGFSSRMPVKPRTKRQRSNGSRAWSLESFSRTGLSALPSSCSSGFSSMPCLMFTKTVQNMDLLNRVSEPPVKKQKKKPENGQLGGSISGGGSQVQRRCSHCQVQKTPQWRAGPLGPKTLCNACGVRFKSGRLFPEYRPACSPTFSSEIHSNSHRKVLEIRKNKETAGPEPGLAQAQMIIPS* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g01539 360 Pfam GATA zinc finger 277 310 IPR000679 GO:0006355|GO:0043565
Pte9g01539 360 SMART GATA_3 271 325 IPR000679 GO:0006355|GO:0043565
Pte9g01539 360 CDD ZnF_GATA 276 333 IPR000679 GO:0006355|GO:0043565
Pte9g01539 360 MobiDBLite consensus disorder prediction 248 271 - -
Pte9g01539 360 MobiDBLite consensus disorder prediction 84 104 - -
Pte9g01539 360 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 273 334 - -
Pte9g01539 360 PANTHER GATA TRANSCRIPTION FACTOR 38 345 - -
Pte9g01539 360 FunFam GATA transcription factor 269 352 - -
Pte9g01539 360 ProSitePatterns GATA-type zinc finger domain. 277 302 IPR000679 GO:0006355|GO:0043565
Pte9g01539 360 Gene3D - 269 343 IPR013088 GO:0006355|GO:0008270
Pte9g01539 360 ProSiteProfiles GATA-type zinc finger domain profile. 271 307 IPR000679 GO:0006355|GO:0043565
Pte9g01539 360 MobiDBLite consensus disorder prediction 63 104 - -
Pte9g01539 360 PIRSF Txn_fac_GATA_plant 20 356 IPR016679 GO:0003677|GO:0005634|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g01539 Pte-Chr9 36464916 36466701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g01539 8 353 C2C2-Gata Transcription Factor Family AT5G66320 43.017 1.22e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pte9g01539 GATA 1.9e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g01539 - - qsa:O6P43_002035 379.793