Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g01529 ATGGAGACCGATGAAGAAGGATCGTCTGGTAAACTGCAATCGCTTGGTGATGACGAGGGTTGCTCACTAACTGGTCGTAATGAACCCGACCAGTTACAATGCCAACTGGATTTGGACGAGGCACGCCATGACGAGACGCGCTTACCTGTTTCAAACGTAGATAGTAGTGTTATGGTCGTCAAAGAGGGCAGTGAGGATACGGATATGGCTGGGGGACTGGTACAAAGCGATGTTCCGGAGAAAGACCAGATTTTCGGTGAAGTAGCAGAGACGAGGGAGGTAGTGACTGTGGAGGATGATGAGGCAAATGGTGGTGTTAAGAAGCAGGAGGTTAAGGTTGCGAATTTATGTGATGCGGGTGAGGAAGCGACTGAGGCCTGTGATGTTACTGGTGGTTGCGTCGATAATCGGGCGAGAGAGATTGAGGGTTTGGATGACATGGAACAGAAGAGGGAAACTGTAGTCGGTGATATAGTGGAGGATAATATGGTTGCGGCAGTTGTGGATGGGAATGCTTTCGCGGGGGAGAGCTCTGTGTCTTCGGTGGATAAGTTGGCTGAAGAAAAAGATTTGAACGAGGCAGTGACACGAGTACCACATGTGGGTGAGGAGGAAGTAAATTTGGATGTCACGGGGACGACATATGAGATGAAGAGCTCTGCGGCAGCGCATAGGGGTTCAATCGATATGGTTGGTAAGGTGGCTGACGATAAGGATTTGGATGAGGCAGCGGGGGAAGTGCCACATGTGGCTGAGGAGAGAGCAAATTTGGATGGAACTGCGACTAGATGTGGTACTGAGAGCTCTGTGTCAGAGCATGTGGGTTCAACGAATGTGGTTAGTATTGTGGCTAAAGAAAAGGATTTGGATGAGCCAGTGGTGGAGTTTCCAGAGATAGCTGAGCAGGAAGTTATTTTAGATGGAACTGCAACAAGAGATGAGTTTGGGAGTGCTGTGTCAGTGCATATGGGTGGAATGGTGTCTGAAGAGAAGGACTCGGATGCAGCAGCAGGGGAAGTGCTACATGTGGCAGCGGAAGAAGTTAATATAGGCGAAACTGCGATGCTAAGGGACTGGGAGGTGACAGGAGTTGGATTTGAACGTGCCAAGGATGATGAGATGGCGAAGGCAGATGAGTCAATTATTCATACCGGTGCTGCAAGGCTAGATAATGTCTCTAACATGGCGGTGGAAGCTAATGAAACGAACAGAATGGATGATGAGAGTGGCAAGGTGGATCAGATCAAGCAGGCTGATGATACAGCTATGGAAATGGAGAAGGGGGAGTCTGAGATGGTGGGGGATGCTGTACAGGTGAAGGAAGAGGTTAATGGGATGAGATCCGAAGCTGCTCCTATGGAATCAGAGGTTAGAGGAGTGGACACGGCTGTGGAAAAGAAGAACGATGTGGATAGTGTGGAGGAGGTTAAGGAGGTGAACAATGAAGTCGACGGGGATGACATGATGGACAAGACAGCTGAAGCGGAGGACAGGGGTTCAGAAGTAGAGGTAGCAGAGCAAGGGACTGTTGTTGGTGTGGAGATTGCAGAGGTCGAAGAGGATGCAGATGAAAATTTCATGGTGGAGGAGACCATGAAGGGAGAGGATGCTGAGGTAGCATATGAAGCTGATGATATGGACGAGGAAGCTGATGCTGCGGATGTGATGGAAGAAGCAGTGGATGCAGAGGAGGCTGAGTCAGAGGAACAGACTAGAAGTAGTGCTATTGGGAAGAGGAAGCGTGGGAAGAATTCCAAGGGTTCAGGAAGAGCACCCTCGAAGAAAAAACAAGAAGAAGATGTGTGTTTCATATGTTTCGATGGAGGTGAACTTGTGCTCTGCGATCGCAGGGGATGCCCAAAGGCATATCATCCTTCATGTGTTAACCGGGATGAGGCATTCTTTAGGTCCAAAGGCCGATGGAATTGTGGGTGGCACCTGTGCAGCAACTGTGAGAAGAATGCATATTATATGTGCTATACTTGTACCTTCTCCTTGTGCAAGGGTTGTGTCAAAGATGCTGTTATTTTATGTGTTAGAGGAAACAAGGGGTTCTGTGAGACCTGCCTGAGAACTGTCATGTTGATAGAACAGAAAGAGCAAGGAAACAAGGACATGCAAGGACAAGTGAATTTTGATGACAAGAGTAGCTGGGAGTATCTTTTCAAGGATTACTGGTTGGATTTGAAAAGTAGGCTATCTCTGATGCATGATGAACTAGCTCAAGCAAAAAATCCATGGAAAGGATCGGAGCCACTCACGACTAAGGAATCTCCTCATGAACTTTACAATGCTAACAAGGATAGGGGTTCAGATTCAGATAGCTCCTGGGGAAACATTGAATTGAAAAATTCTAGAAGGAGGAAGCCGAAGAAAAAGTTGAAATCTCGCACCAAAGATGGGGATTCACGTAGCACAGTGACTGGAGAAGGGCCATCTGCTGATGGTAGCTTTGAGTGGGCATCTAAAGAGCTTTTGGAGTTTGTGATACACATGCGCAATGGTGATAAGGCTGTTCTATCTCAATTTGATGTGCAAGCTCTCTTGCTAGAATACATAAAACAAAACAAACTTAGAGATCCTCGGAGAAAGAGCCAAATTATTTGCGATGCAAGGCTCCAAAATCTGTTTGGGAAAGCGCGAGTGGGGCATTTTGAAATGTTAAAGCTTCTTGAATCTCATTTTCTTTTAAAGGAAGACTCACAGGTTGAGGACTTGCAGGAAAGTGTTGTTGATGTTGAGGCTAGTCAGTTGGAAGGGGATCAGAATTCTGAATCAGTCACAAAGCCAGTCAAGGATAAGAAAAGAAAAACACGAAAAAAGAGTGATGATAGGGGCCTTCAGTCTAATCTTGATGATTATGCTGCAATAGATACTCACAATATAAATTTAATTTACTTAAAACGTAAGCTGGCTGAAGATTTAATTGAGAATGCAGAAACATTTCAAGACAAAGTTGTTGGGTCCTTTGCAAGGATAAGGATTTCTGCTGGTGGTCAGAAGCAAGACTTGTATAGACTGGTACAAGTTGTTGGTACATGCAAAGGTACTGAGCCCTATAAACTTGGTAAAATGATGACAGATACCTTACTAGAAATATTAAATTTGAACAAGAAAGAAGTTATCTCAATTGATATAATCTCAAATCAAGAGTTCACAGAGGATGAATGCAAGCGGCTTCGCCAGAGTATTAGATGTGGTCTGATAAACAGGCTCACTGTGGGTGATATCCGAGAGAAAGCAATGGCGCTTCAAGAAGTAAGAGTAAAAGATTTGTTGGAGGCTGAGATATTGCGGGTTAGTCATCTCCGGGATAGAGCTAGTGATATGGGGCGTAGAAAGGATCTTCGTGAATGTGTGGAGAAATTGCAAATGCTGAAAGCACCAGAGGAGCGGCAGCGTAGACTAGAGGAAATTCCAGAGATACATACAGACCCAAATATGGATCCAAGTTATGAGTCCGAAGAAGATGAAGTCAGACAAGAAAACATGAAACCGAGGGCTAGTGGATTTAGCAGGAGAGGAAGAGAGCCGATTTCTCCTCGGGAAAGTGGTGGTCCTCAGAGTGATGCTTGGAATGGTACTAGAAACCATTCTAATGCAAACAGGGAACTCAACAGGAGCATGTCTAACAAGGGTTTCTCTAGAGATGTTACTGATATGACTAGCACCAGCGATATGGGGCATAATAGTCCACGGAAGCAAGGAAGAGAAATGGAGAGAGAATCCCATTTGTCAAGTAGCTGGGAGAAGCCAAAACTTTCATCAAGTGCAGAAATCAGTTCTAGAAATAACAGACCTGTTCTGATGTCTGGACCTTTTTCTTCGGTCACTGAAGGTTCTGCCACGCGTCCATCTACTGCAGGGGTACAACCTGCTCCCAAAATTAATGAAACGGAAAAAATGTGGCATTATAAGGATCCATCTGGAAAAGTTCAGGGACCATTTTCCACAGTACAGCTTCGTAAATGGAGTAATACTGGTTATTTTCCTGCAGATTTGAGAATTTGGAAAGCCAGTGAAACACCAGATGACTCGATATTATTGACCGATGCATTGGCTGGAAAGTTCCAGAAAGAACCATCTTTGCTGTTAAAAAATCAAATGGTCCATGATTCTCAATATTCTGGAAAGCATCTACAAAATGTCGAAGCCCAACTTGCTGAAAGATCTCAGCTTGTTCAAAGTGGTGGATCTTGGAATTCACGTGGTGACTCTCCAAGTCCACCTGCTTTGGAAAATAGGAGTTCTAAGGGTAATTACGGTGTGTTGACCTCCAAGCCTGCCTCATTATCTTCCGAGGTCCCAAAGAATTCAACCAATGAATGGGGCTCTGACCATGCGAGAAAAAGTGAATTGATGAACCTGCCTTCTCCTACTCCGCAAAGCACACCAGGTGGGATTAAGGTTCAAGCTTTTGAAAATAAATGGGGATCCAGTTCTGGTCATTCATCTACTTCTGTGTTGGGAATGAGCGCATTAACAGTTGCTAATGGTGTGCAGTCTCCTGCTGCTGTCAACCCAAATTCAGCGGGGCAGGATTTGGGAAATGCTTCCTTAAATTCACTTCCTACTGCGCCAGTTTCCACTCCTTTTCTAGTCAATACCTCGTTGAACCCAGTTCTTCTACAAAACTTGGTCCAATCAATGAGTAACTACAATAATCAAGCTGAAACCAAAGGATGGGGATCTCCTTTGGTCTCGAAACCTGAATTAGCAGCATCTATACATGGAGGTGAGTCTAAAGCCTGGGTAAATGCTCCTCCACAGAGAATAGAACAACTTAATACTGCTGTTACTCCTGCTCAATGTGACAGTACTACATCGGTCCTAAACCCAAACTTTAACTCTGGGAATACAACTGGCACCTATTCTGCAGCCTGCTTCCCAGGGATGACGAGTACCGACACTCGGAGACAGCCTGCTTCAATTAGTCAATCAAATGCTCAGCCTCCTGCTGCTGCCAACCTGCAGTGGGGTGTGGGTGTTGCCAATAATCAAATTGGTGTTTCAAGACCAGTCCCAGAAAATCAAAATATGGCTTGGGGAGTGATGCAAGGAAATCAAAACATGGGGTGGGCAGGACCAGTACCCACTAATTCAAATGTAAACTGGTTACCTGGTCAGTTGCCTGCATCTGGCAATGTAAACCCAGGATGGGCTGCTCCAATGCAAGGATCATCAGCAGTAGGTGCAATGCCTGGTCGGACAGGACCAACGCAAGGGCAGCCACAGATGAGCGCAAATCCAGGCTGGGTAATTCCCGGTCAAGGGCCACCACCTGCAAACACAAATTCTGGCTGGAATCCCGCATCATCAAATCCAAACATGTGGGTTGGTGAGCAAAGTCACGGTGGAAGCAGATATACGAACACTGGAGATCGTGTCCCACATGGAGATTCTGGTTATAGTGGAAATCAACCTTGGAATAGACAATCATCATTTAACGGTGGAGGAGGCGGTGGAGGTCCTGGCAGGCCTCCTTTCAAAGGTCAGAGAGTATGCAAGTACCATGAGGGTGGCCATTGCAAGAAAGGAGCTTCCTGTGATTACTTCCATAATTAA 5565 0.4568 METDEEGSSGKLQSLGDDEGCSLTGRNEPDQLQCQLDLDEARHDETRLPVSNVDSSVMVVKEGSEDTDMAGGLVQSDVPEKDQIFGEVAETREVVTVEDDEANGGVKKQEVKVANLCDAGEEATEACDVTGGCVDNRAREIEGLDDMEQKRETVVGDIVEDNMVAAVVDGNAFAGESSVSSVDKLAEEKDLNEAVTRVPHVGEEEVNLDVTGTTYEMKSSAAAHRGSIDMVGKVADDKDLDEAAGEVPHVAEERANLDGTATRCGTESSVSEHVGSTNVVSIVAKEKDLDEPVVEFPEIAEQEVILDGTATRDEFGSAVSVHMGGMVSEEKDSDAAAGEVLHVAAEEVNIGETAMLRDWEVTGVGFERAKDDEMAKADESIIHTGAARLDNVSNMAVEANETNRMDDESGKVDQIKQADDTAMEMEKGESEMVGDAVQVKEEVNGMRSEAAPMESEVRGVDTAVEKKNDVDSVEEVKEVNNEVDGDDMMDKTAEAEDRGSEVEVAEQGTVVGVEIAEVEEDADENFMVEETMKGEDAEVAYEADDMDEEADAADVMEEAVDAEEAESEEQTRSSAIGKRKRGKNSKGSGRAPSKKKQEEDVCFICFDGGELVLCDRRGCPKAYHPSCVNRDEAFFRSKGRWNCGWHLCSNCEKNAYYMCYTCTFSLCKGCVKDAVILCVRGNKGFCETCLRTVMLIEQKEQGNKDMQGQVNFDDKSSWEYLFKDYWLDLKSRLSLMHDELAQAKNPWKGSEPLTTKESPHELYNANKDRGSDSDSSWGNIELKNSRRRKPKKKLKSRTKDGDSRSTVTGEGPSADGSFEWASKELLEFVIHMRNGDKAVLSQFDVQALLLEYIKQNKLRDPRRKSQIICDARLQNLFGKARVGHFEMLKLLESHFLLKEDSQVEDLQESVVDVEASQLEGDQNSESVTKPVKDKKRKTRKKSDDRGLQSNLDDYAAIDTHNINLIYLKRKLAEDLIENAETFQDKVVGSFARIRISAGGQKQDLYRLVQVVGTCKGTEPYKLGKMMTDTLLEILNLNKKEVISIDIISNQEFTEDECKRLRQSIRCGLINRLTVGDIREKAMALQEVRVKDLLEAEILRVSHLRDRASDMGRRKDLRECVEKLQMLKAPEERQRRLEEIPEIHTDPNMDPSYESEEDEVRQENMKPRASGFSRRGREPISPRESGGPQSDAWNGTRNHSNANRELNRSMSNKGFSRDVTDMTSTSDMGHNSPRKQGREMERESHLSSSWEKPKLSSSAEISSRNNRPVLMSGPFSSVTEGSATRPSTAGVQPAPKINETEKMWHYKDPSGKVQGPFSTVQLRKWSNTGYFPADLRIWKASETPDDSILLTDALAGKFQKEPSLLLKNQMVHDSQYSGKHLQNVEAQLAERSQLVQSGGSWNSRGDSPSPPALENRSSKGNYGVLTSKPASLSSEVPKNSTNEWGSDHARKSELMNLPSPTPQSTPGGIKVQAFENKWGSSSGHSSTSVLGMSALTVANGVQSPAAVNPNSAGQDLGNASLNSLPTAPVSTPFLVNTSLNPVLLQNLVQSMSNYNNQAETKGWGSPLVSKPELAASIHGGESKAWVNAPPQRIEQLNTAVTPAQCDSTTSVLNPNFNSGNTTGTYSAACFPGMTSTDTRRQPASISQSNAQPPAAANLQWGVGVANNQIGVSRPVPENQNMAWGVMQGNQNMGWAGPVPTNSNVNWLPGQLPASGNVNPGWAAPMQGSSAVGAMPGRTGPTQGQPQMSANPGWVIPGQGPPPANTNSGWNPASSNPNMWVGEQSHGGSRYTNTGDRVPHGDSGYSGNQPWNRQSSFNGGGGGGGPGRPPFKGQRVCKYHEGGHCKKGASCDYFHN* 1855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g01529 1854 MobiDBLite consensus disorder prediction 1803 1817 - -
Pte9g01529 1854 MobiDBLite consensus disorder prediction 917 945 - -
Pte9g01529 1854 Gene3D - 1301 1359 IPR035445 -
Pte9g01529 1854 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 589 692 IPR013083 -
Pte9g01529 1854 MobiDBLite consensus disorder prediction 1393 1442 - -
Pte9g01529 1854 FunFam Zinc finger CCCH domain-containing protein 19 807 902 - -
Pte9g01529 1854 ProSitePatterns Zinc finger PHD-type signature. 602 662 IPR019786 -
Pte9g01529 1854 Pfam SWIB/MDM2 domain 822 895 IPR003121 -
Pte9g01529 1854 SMART gyf_5 1301 1356 IPR003169 GO:0005515
Pte9g01529 1854 ProSiteProfiles SWIB/MDM2 domain profile. 814 897 IPR003121 -
Pte9g01529 1854 ProSiteProfiles Zinc finger C3H1-type profile. 1829 1854 IPR000571 GO:0046872
Pte9g01529 1854 CDD Bbox1 647 673 - -
Pte9g01529 1854 ProSiteProfiles GYF domain profile. 1300 1354 IPR003169 GO:0005515
Pte9g01529 1854 SUPERFAMILY Plus3-like 957 1086 IPR036128 GO:0003677
Pte9g01529 1854 MobiDBLite consensus disorder prediction 1186 1230 - -
Pte9g01529 1854 SUPERFAMILY GYF domain 1293 1353 IPR035445 -
Pte9g01529 1854 CDD PHD5_NSD 601 646 - -
Pte9g01529 1854 MobiDBLite consensus disorder prediction 1 28 - -
Pte9g01529 1854 MobiDBLite consensus disorder prediction 1759 1790 - -
Pte9g01529 1854 FunFam Zinc finger CCCH domain-containing protein 19 591 691 - -
Pte9g01529 1854 Gene3D - 957 1087 IPR036128 GO:0003677
Pte9g01529 1854 SUPERFAMILY FYVE/PHD zinc finger 597 651 IPR011011 -
Pte9g01529 1854 CDD GYF 1300 1355 IPR003169 GO:0005515
Pte9g01529 1854 SMART rtf1 956 1066 IPR004343 GO:0003677
Pte9g01529 1854 MobiDBLite consensus disorder prediction 1393 1445 - -
Pte9g01529 1854 SMART swib_2 822 900 IPR019835 -
Pte9g01529 1854 MobiDBLite consensus disorder prediction 1757 1830 - -
Pte9g01529 1854 MobiDBLite consensus disorder prediction 1131 1292 - -
Pte9g01529 1854 MobiDBLite consensus disorder prediction 1249 1292 - -
Pte9g01529 1854 MobiDBLite consensus disorder prediction 1231 1248 - -
Pte9g01529 1854 ProSiteProfiles Plus3 domain profile. 956 1089 IPR004343 GO:0003677
Pte9g01529 1854 Coils Coil 546 566 - -
Pte9g01529 1854 Pfam GYF domain 1303 1343 IPR003169 GO:0005515
Pte9g01529 1854 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 495 1854 - -
Pte9g01529 1854 MobiDBLite consensus disorder prediction 559 593 - -
Pte9g01529 1854 Gene3D SWIB/MDM2 domain 810 904 IPR036885 -
Pte9g01529 1854 SUPERFAMILY SWIB/MDM2 domain 818 896 IPR036885 -
Pte9g01529 1854 CDD SWIB-MDM2_like 820 895 - -
Pte9g01529 1854 FunFam Zinc finger CCCH domain-containing protein 19 957 1086 - -
Pte9g01529 1854 ProSiteProfiles Zinc finger PHD-type profile. 599 665 IPR019787 -
Pte9g01529 1854 Pfam Plus-3 domain 961 1064 IPR004343 GO:0003677
Pte9g01529 1854 SMART PHD_3 601 647 IPR001965 -
Pte9g01529 1854 MobiDBLite consensus disorder prediction 746 815 - -
Pte9g01529 1854 MobiDBLite consensus disorder prediction 1131 1180 - -
Pte9g01529 1854 FunFam Zinc finger CCCH domain-containing protein 19 1302 1359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g01529 Pte-Chr9 36413206 36423806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g01529 599 686 PHD Transcription Factor Family AT5G36670 33.000 1.79e-06 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Pte9g01529 Plus-3 7.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g01529 - - qsa:O6P43_031598 1580.07