Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte9g01525 | ATGGAGGTACTAACGAAAATTTGGCCCGGTTTTGCAGCTCCTTCTTCACCAGAAGACTCTCTGTCAAGTCCAATCGGGAACACATTCTCATCTCCAGGGGAAGCTTCCCGAAGAAGACGCCGTCAATCATCCACGCCGTCTGCATTTGCAACCCCTTCGCCTCACCAATCCCGTTTCGCTTCAGATGCAACACCAACCCCATCACGCTCAAGGCAAAGAGGTAGTGCTGGCAGTGGGCGAAGGGCAAGCTTCAATGCTCCCACGCCCACTTCCACCGACGATGCCCCTCCGTCTTCTGAAGGGGGCGAGGGTTATGATACCGACGATGTGAGGCCAACCTTTGTTTGGGGGACGAATATAAGTGTAGAAGATGTGAATGAAGCGATTATGAGATTCTTGAGGCATTTCAGAGAGTCACAATCTCAGACTCAGAGTGATACTTTACATCCTGAAGGGAAGTATGAAAGTGCTGTGAAAAGGGTTATTGAGATTGAAGGTGATTCCCTGGATGTCGATGCACACGACGTCTTTGATTATGATCCTGATTTATATAGCAAAATGGTTCGGTACCCACTCGAGGTGCTCGCAATTTTTGATTTGGTTTTGCTGAACATGGTGGCAAAAATCAATCCTTTGTTTGAGAAGCATATTCAAACTCGAATTTTCAACCTCAGGAATTCAACATCAATGAGGAATTTGAATCCGTCTGATATTGAGAGGATGGTGTCATTGAAGGGAATGATTATACGATGTAGTTCGATAATACCAGAGATCAGGGAAGCTGTATTTAGGTGCCTTGTGTGTGGATTCTACTCGGAACCGATTGCCGTCGAGAGAGGGCGGATTATTGAACCAACTGTATGCTTGAGAGCTGAATGTCAAGCCAGGAACTCCATGGCATTGGTCCACAACAGATGCAGGTTCACTGATAAGCAAATTGTGAGGCTCCAGGAGACACCCGATGAGATTCCTGATGGAGGAACACCACACACGGTGAGCTTGCTGATGCATGATAAGCTGGTAGATGCAGGAAAGCCAGGGGATAGAGTTGAGATCACCGGCATATACAGGGCTATGAGTGTCAGAGTTGGACCCACTCAGAGAACTGTCAAGTCATTATTCAAGACTTATGTCGATTGCCTTCATATAAAGAAATCTGATAGGTCAAGAATGATGGCAGCTGACTCAGCAGAATTTAATACGCCCTTGGGAAGAATTGTAGATGAAGTATCTTTTGACGAAGAAAAGGTGGCTCAGCTAAAAGAGCTGTCGCAACAGCCTGATATTTATGAAAGACTGACAAAATCATTGGCACCAAATATCTGGGAGCTCGACGATGTCAAGAAAGGCCTTCTTTGTCAGCTGTTTGGGGGGAATGCTTTGAAGTTGCCCACAGGTGCTAGCTTCCGGGGTGATATCAATATCCTACTGGTTGGTGATCCTGGAACCAGCAAGTCCCAGCTTCTTCAATACATTCACAAGCTATCGCCTCGTGGCATTTACACCAGTGGGAGAGGAAGTTCAGCTGTTGGCTTGACTGCTTATGTGGCCAAGGATCCTGAAACAGGCGAAACTGTTCTAGAAAGTGGTGCACTTGTTTTGAGTGATAGAGGAATCTGCTGCATCGATGAATTTGATAAAATGTCTGACAATGCAAGGAGTATGTTGCATGAGGTAATGGAGCAACAAACGGTTTCTATTGCCAAGGCAGGTATAATTGCATCCCTCAATGCCAGAACTTCCGTGCTGGCCTGTGCAAATCCGATTGGGTCTCGATATAATCCTCGCCTCTCTGTCATTGATAACATACACCTTCCTCCCACTCTTCTTTCAAGGTTTGATTTGATTTATCTTATCCTCGACAAGGCTGATGAGCAGACAGATAGACGTCTTGCCAGACATATAGTTTCCCTACACTTTGAGAATCCTGAGATCATGGAGCGGGATGTTTTGGACCTTCATACACTGACTGCATACCTGAGTTATGCCCGTAAGCATATCCAACCACGACTATCTGACGAAGCTGCAGAAGAGCTAACTCGAGGATATGTAGAGATGAGAAGAAGAGGGAACTTTCCTGGCAGTAGCAAAAAGGTGATAACAGCAACTCCAAGGCAGATTGAGAGTTTGATACGACTTAGTGAAGCCTTGGCTCGGATCAGGTTTTCAGAAACGGTTGAAAAGCATGACGTGCTGGAGGCATTTCGGCTTCTGGAGGTTGCAATGCAGCAGTCAGCTACTGATCATGCAACCGGAACTATTGACATGGATCTAATTACTACTGGGATTTCTGCTAGTGAAAGGATGAGGCGAGAGAATCTAATAACAGCAAGTCGTAACATAATTATGGATAAGATGCAACTGGGTGGACCGTCAATGCGGTTTTTAGAGTTGCTGGATGAGATGAAGAAGCAGAACACTAGCATTGAGGTTAATCTTAATGATCTCAAGAATGCCATCTCAGCACTTGCTGGAGAGGGATTTGTGATTGTCCATGGTGATAGCGTAAAAAGGGTATGA | 2520 | 0.4567 | MEVLTKIWPGFAAPSSPEDSLSSPIGNTFSSPGEASRRRRRQSSTPSAFATPSPHQSRFASDATPTPSRSRQRGSAGSGRRASFNAPTPTSTDDAPPSSEGGEGYDTDDVRPTFVWGTNISVEDVNEAIMRFLRHFRESQSQTQSDTLHPEGKYESAVKRVIEIEGDSLDVDAHDVFDYDPDLYSKMVRYPLEVLAIFDLVLLNMVAKINPLFEKHIQTRIFNLRNSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIREAVFRCLVCGFYSEPIAVERGRIIEPTVCLRAECQARNSMALVHNRCRFTDKQIVRLQETPDEIPDGGTPHTVSLLMHDKLVDAGKPGDRVEITGIYRAMSVRVGPTQRTVKSLFKTYVDCLHIKKSDRSRMMAADSAEFNTPLGRIVDEVSFDEEKVAQLKELSQQPDIYERLTKSLAPNIWELDDVKKGLLCQLFGGNALKLPTGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVAKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPIGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLARHIVSLHFENPEIMERDVLDLHTLTAYLSYARKHIQPRLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSETVEKHDVLEAFRLLEVAMQQSATDHATGTIDMDLITTGISASERMRRENLITASRNIIMDKMQLGGPSMRFLELLDEMKKQNTSIEVNLNDLKNAISALAGEGFVIVHGDSVKRV* | 840 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte9g01525 | 839 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 440 | 756 | IPR027417 | - | |
| Pte9g01525 | 839 | Pfam | MCM P-loop domain | 417 | 639 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pte9g01525 | 839 | SMART | mcm | 226 | 743 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Pte9g01525 | 839 | FunFam | DNA helicase | 410 | 748 | - | - | |
| Pte9g01525 | 839 | CDD | MCM4 | 432 | 741 | - | - | |
| Pte9g01525 | 839 | MobiDBLite | consensus disorder prediction | 42 | 97 | - | - | |
| Pte9g01525 | 839 | ProSiteProfiles | MCM family domain profile. | 429 | 635 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pte9g01525 | 839 | SMART | AAA_5 | 471 | 621 | IPR003593 | GO:0016887 | |
| Pte9g01525 | 839 | Gene3D | - | 119 | 224 | - | - | |
| Pte9g01525 | 839 | FunFam | DNA helicase | 257 | 309 | - | - | |
| Pte9g01525 | 839 | Gene3D | - | 410 | 757 | IPR027417 | - | |
| Pte9g01525 | 839 | SUPERFAMILY | Nucleic acid-binding proteins | 148 | 380 | IPR012340 | - | |
| Pte9g01525 | 839 | Gene3D | - | 257 | 309 | - | - | |
| Pte9g01525 | 839 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 127 | 794 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Pte9g01525 | 839 | Pfam | MCM N-terminal domain | 127 | 226 | IPR027925 | - | |
| Pte9g01525 | 839 | Gene3D | - | 230 | 369 | IPR012340 | - | |
| Pte9g01525 | 839 | Pfam | MCM AAA-lid domain | 655 | 741 | IPR041562 | - | |
| Pte9g01525 | 839 | MobiDBLite | consensus disorder prediction | 1 | 110 | - | - | |
| Pte9g01525 | 839 | Coils | Coil | 799 | 819 | - | - | |
| Pte9g01525 | 839 | MobiDBLite | consensus disorder prediction | 16 | 33 | - | - | |
| Pte9g01525 | 839 | ProSitePatterns | MCM family signature. | 538 | 546 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Pte9g01525 | 839 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 470 | 485 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pte9g01525 | 839 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 582 | 594 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pte9g01525 | 839 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 609 | 617 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pte9g01525 | 839 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 530 | 544 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pte9g01525 | 839 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 558 | 571 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pte9g01525 | 839 | FunFam | DNA helicase | 119 | 224 | - | - | |
| Pte9g01525 | 839 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 303 | 315 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Pte9g01525 | 839 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 252 | 265 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Pte9g01525 | 839 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 743 | 752 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Pte9g01525 | 839 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 591 | 608 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Pte9g01525 | 839 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 445 | 456 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Pte9g01525 | 839 | Pfam | MCM OB domain | 230 | 359 | IPR033762 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte9g01525 | Pte-Chr9 | 36376010 | 36381637 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte9g01525 | 13 | 840 | Core DNA Replication Machinery Family | AT2G16440 | 72.912 | 0.0 | 1236 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte9g01525 | K02212 | - | qsa:O6P43_011555 | 1356.27 |