Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g01521 ATGTATATATGTATTCAGAATAATATTAGGCATGCGTACATAAAGAGAACCCGGAACTTTCTGGGAGCTTCTCTTTCACTTGCAATTTTCTCGGGGGGGAAAACTGAGTTAGTTTTTTTTTTTTTTCCCTTGTTGTCCTTAGCTGGAGATTGCGTGCTTATGAGGCCGTCCGAACCATCCAAGCCCTCATACGTGGCGAGGATCGAGCAGATCGAATCGGACTCGCGCGGAGCCAACGTTAAAGTTCACGTCAGGTGGTATTACCGGCCGGAGGAGTCTATTGGTGGTCGACGGCAGTTTCATGGTTCCAAAGAGGTCTTCCTCTCCGATCACTTTGATGTTCAGAGTGCTGATAGTATTGAAGGGAAGTGTACGGTCCACAGTTTCAAGAGCTATACGAAGCTTGATGCTGTTGGTAACGACGATTTCTTTTGCCGATTTGAGTACAATTCGGCTACCGGAGCTTTTAATCCCGATAGAGTGGCAGTGTATTGTAAATGTGAAATGCCTTATAACCCAGATGATTTAATGGTACAATGTGAAGGTTGCAGTGATTGGTTTCATCCTGCTTGTATAGACATGACTGTGGAGGAAGCCAAAAGACTTGACCACTTCTTCTGTGAAAGCTGTTCTTCACTAGGTCAAAAGAAGTTGGAAAATTCTCTTGCTGCTTCCAGACACTCTGATACTAAGGTGGATAATAAACGCCGTCGGCGGTAA 720 0.4472 MYICIQNNIRHAYIKRTRNFLGASLSLAIFSGGKTELVFFFFPLLSLAGDCVLMRPSEPSKPSYVARIEQIESDSRGANVKVHVRWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSADSIEGKCTVHSFKSYTKLDAVGNDDFFCRFEYNSATGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPACIDMTVEEAKRLDHFFCESCSSLGQKKLENSLAASRHSDTKVDNKRRRR* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g01521 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 229 IPR013083 -
Pte9g01521 239 Pfam PHD-finger 164 212 IPR019787 -
Pte9g01521 239 SUPERFAMILY FYVE/PHD zinc finger 154 214 IPR011011 -
Pte9g01521 239 SMART BAH_4 45 160 IPR001025 GO:0003682
Pte9g01521 239 SMART PHD_3 164 211 IPR001965 -
Pte9g01521 239 ProSiteProfiles Zinc finger PHD-type profile. 162 213 IPR019787 -
Pte9g01521 239 FunFam Bromo-adjacent homology (BAH) domain-containing protein 157 227 - -
Pte9g01521 239 ProSitePatterns Zinc finger PHD-type signature. 165 210 IPR019786 -
Pte9g01521 239 Gene3D - 46 156 IPR043151 -
Pte9g01521 239 PANTHER OS08G0421900 PROTEIN 48 231 - -
Pte9g01521 239 Pfam BAH domain 49 159 IPR001025 GO:0003682
Pte9g01521 239 ProSiteProfiles BAH domain profile. 44 160 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g01521 Pte-Chr9 36348796 36351533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g01521 64 162 Core DNA Replication Machinery Family AT4G14700 30.303 5.95e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte9g01521 BAH 7.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g01521 K25868 - gmx:100787968 385.571